1QHH

structure of dna helicase with adpnp

• Total interactions analyzed: 6
• Total true interactions: 6
• Strongest Interaction:
  • Chains: B-D
  • Int. Res.: 204
  • Norm. En. per Res.: -8.7146
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-281.0552	-83.7285	-1084.65	-1449.4337	265	70	45	47330	13	84	69
A-C	-19.3662	-19.618	-43.322	-82.3062	25	3	0	2085	1	14	14
A-D	0.0	0.0	-10.0055	-10.0055	18	0	0	588	0	3	2
B-C	-27.645	-46.9878	-396.599	-471.2318	143	13	23	18849	3	40	43
B-D	-362.1065	-310.2509	-1105.42	-1777.7773	204	64	56	43539	22	101	80
C-D	-9.4309	0.0	-40.632	-50.0629	24	1	0	1518	0	8	2

Interface residues

• A-B: ALA150A, ALA151A, ALA162A, ALA19A, ALA231B, ALA240B, ALA248B, ALA252B, ALA262B, ALA277B, ALA296B, ALA31A, ALA33A, ALA46A, ALA55A, ALA61A, ALA68A, ARG101A, ARG102A, ARG106A, ARG111A, ARG142A, ARG164A, ARG183B, ARG186B, ARG205B, ARG21A, ARG230B, ARG260B, ARG272B, ARG287B, ARG306B, ARG310B, ARG39A, ARG420B, ARG44A, ARG75A, ARG98A, ASN110A, ASN112A, ASN133A, ASN13A, ASN153A, ASN187B, ASN229B, ASN245B, ASN266B, ASN276B, ASN285B, ASN58A, ASP103A, ASP105A, ASP117A, ASP120A, ASP135A, ASP175B, ASP191B, ASP193B, ASP194B, ASP204B, ASP208B, ASP223B, ASP227B, ASP251B, ASP253B, ASP263B, ASP273B, ASP86A, CYS247B, CYS96A, GLN121A, GLN160A, GLN16A, GLN178B, GLN17A, GLN181B, GLN182B, GLN201B, GLN214B, GLN218B, GLN226B, GLN232B, GLN244B, GLN254B, GLN284B, GLU131A, GLU140A, GLU154A, GLU159A, GLU15A, GLU170B, GLU179B, GLU18A, GLU224B, GLU24A, GLU271B, GLU283B, GLU71A, GLY108A, GLY146A, GLY250B, GLY25A, GLY261B, GLY32A, GLY34A, GLY36A, GLY421B, HIS11A, HIS188B, HIS221B, HIS43A, HIS53A, HIS93A, ILE104A, ILE107A, ILE109A, ILE115A, ILE128A, ILE134A, ILE144A, ILE148A, ILE196B, ILE200B, ILE220B, ILE222B, ILE246B, ILE264B, ILE267B, ILE280B, ILE29A, ILE311B, ILE422B, ILE45A, ILE59A, ILE62A, ILE89A, ILE99A, LEU100A, LEU116A, LEU122A, LEU129A, LEU12A, LEU145A, LEU155A, LEU156A, LEU184B, LEU185B, LEU190B, LEU195B, LEU202B, LEU210B, LEU235B, LEU239B, LEU268B, LEU27A, LEU281B, LEU282B, LEU28A, LEU293B, LEU41A, LEU48A, LEU60A, LYS126A, LYS130A, LYS132A, LYS137A, LYS138A, LYS14A, LYS152A, LYS163A, LYS171B, LYS216B, LYS237B, LYS238B, LYS278B, LYS307B, LYS309B, LYS37A, LYS419B, LYS52A, MET125A, MET197B, MET30A, MET49A, MET72A, MET95A, PHE113A, PHE139A, PHE161A, PHE192B, PHE203B, PHE217B, PHE243B, PHE270B, PHE64A, PHE92A, PRO118A, PRO136A, PRO141A, PRO157A, PRO158A, PRO207B, PRO26A, PRO275B, PRO308B, PRO418B, PRO56A, SER114A, SER123A, SER149A, SER174B, SER189B, SER269B, SER288B, SER35A, SER90A, SER94A, THR119A, THR127A, THR143A, THR147A, THR198B, THR199B, THR228B, THR22A, THR234B, THR23A, THR38A, THR426B, THR42A, THR63A, THR65A, THR91A, TRP259B, TRP312B, TRP57A, TRP88A, TYR168B, TYR169B, TYR177B, TYR180B, TYR212B, TYR213B, TYR215B, TYR219B, TYR225B, TYR233B, TYR257B, TYR274B, TYR286B, TYR47A, VAL124A, VAL172B, VAL173B, VAL176B, VAL206B, VAL209B, VAL20A, VAL236B, VAL249B, VAL279B, VAL40A, VAL54A, VAL87A, VAL97A
• A-C: ALA499C, ALA505C, ARG142A, ARG494C, ARG501C, ARG508C, ASP135A, GLU140A, GLU495C, GLU500C, GLU504C, GLY146A, ILE144A, LEU145A, LEU497C, LYS137A, LYS138A, LYS498C, MET496C, PHE139A, PRO136A, PRO141A, THR143A, THR147A, THR502C
• A-D: ALA31A, ALA33A, ARG610D, GLU571D, GLY32A, GLY34A, GLY569D, LEU570D, LYS37A, LYS568D, LYS67A, MET30A, PHE64A, SER35A, THR609D, THR65A, TYR605D, VAL606D
• B-C: ALA362B, ALA397B, ALA403B, ALA424B, ALA444C, ALA457C, ALA458C, ALA460C, ALA462C, ALA463C, ALA505C, ALA533C, ALA539C, ARG260B, ARG359B, ARG365B, ARG389B, ARG400B, ARG413B, ARG420B, ARG465C, ARG494C, ARG501C, ARG508C, ASN361B, ASN404B, ASN416B, ASN511C, ASP388B, ASP394B, ASP406B, ASP407B, ASP408B, ASP428B, ASP489C, ASP513C, ASP537C, GLN363B, GLN467C, GLN470C, GLN473C, GLN475C, GLN506C, GLU170B, GLU329B, GLU368B, GLU369B, GLU391B, GLU443C, GLU469C, GLU485C, GLU486C, GLU495C, GLU500C, GLU504C, GLU510C, GLU514C, GLY421B, GLY423B, GLY459C, GLY492C, HIS521C, ILE392B, ILE395B, ILE402B, ILE414B, ILE415B, ILE422B, ILE427B, ILE503C, ILE532C, ILE541C, LEU372B, LEU384B, LEU396B, LEU399B, LEU409B, LEU411B, LEU412B, LEU441C, LEU445C, LEU453C, LEU461C, LEU468C, LEU474C, LEU483C, LEU488C, LEU497C, LEU509C, LEU512C, LEU516C, LEU531C, LEU535C, LEU538C, LEU540C, LYS373B, LYS385B, LYS390B, LYS393B, LYS419B, LYS456C, LYS490C, MET367B, MET370B, MET496C, PHE386B, PHE442C, PHE464C, PHE515C, PHE522C, PHE534C, PRO405B, PRO418B, SER364B, SER410B, SER425B, SER491C, SER507C, SER517C, SER542C, THR360B, THR426B, THR472C, THR481C, THR502C, THR519C, THR536C, TRP259B, TRP471C, TYR169B, TYR378B, TYR387B, TYR398B, TYR493C, VAL173B, VAL366B, VAL401B, VAL417B, VAL478C, VAL480C, VAL484C, VAL487C, VAL518C
• B-D: ALA252B, ALA262B, ALA295B, ALA296B, ALA326B, ALA330B, ALA333B, ALA337B, ALA343B, ALA355B, ALA362B, ALA558D, ALA566D, ALA567D, ALA604D, ALA611D, ALA620D, ALA643D, ALA649D, ARG258B, ARG260B, ARG287B, ARG291B, ARG306B, ARG310B, ARG339B, ARG341B, ARG349B, ARG350B, ARG352B, ARG359B, ARG365B, ARG389B, ARG589D, ARG601D, ARG602D, ARG610D, ARG623D, ARG636D, ARG651D, ASN285B, ASN297B, ASN303B, ASN305B, ASN315B, ASN328B, ASN361B, ASN588D, ASN639D, ASP223B, ASP227B, ASP251B, ASP253B, ASP263B, ASP331B, ASP353B, ASP557D, ASP593D, ASP594D, ASP595D, ASP632D, GLN226B, GLN254B, GLN265B, GLN294B, GLN363B, GLN379B, GLN621D, GLN630D, GLU224B, GLU283B, GLU298B, GLU301B, GLU317B, GLU325B, GLU329B, GLU332B, GLU342B, GLU348B, GLU368B, GLU369B, GLU571D, GLU581D, GLU596D, GLU598D, GLU599D, GLU600D, GLU612D, GLU613D, GLU614D, GLU640D, GLU647D, GLY250B, GLY318B, GLY338B, GLY382B, GLY383B, GLY556D, GLY569D, GLY579D, GLY583D, GLY607D, GLY627D, HIS302B, HIS565D, HIS587D, HIS644D, ILE256B, ILE264B, ILE292B, ILE300B, ILE311B, ILE321B, ILE340B, ILE376B, ILE380B, ILE578D, ILE584D, ILE608D, ILE629D, ILE641D, LEU268B, LEU293B, LEU322B, LEU357B, LEU371B, LEU561D, LEU564D, LEU570D, LEU577D, LEU603D, LEU615D, LEU617D, LEU625D, LEU638D, LEU645D, LEU646D, LYS290B, LYS309B, LYS319B, LYS385B, LYS568D, MET327B, MET367B, MET370B, MET560D, MET562D, MET580D, MET597D, MET622D, MET631D, PHE335B, PHE354B, PHE386B, PHE572D, PHE576D, PHE585D, PHE626D, PHE637D, PRO316B, PRO320B, PRO377B, PRO573D, PRO586D, PRO633D, PRO634D, PRO642D, SER255B, SER288B, SER364B, SER590D, SER619D, SER635D, SER650D, THR289B, THR313B, THR360B, THR563D, THR609D, THR618D, THR624D, THR648D, TRP259B, TYR225B, TYR257B, TYR286B, TYR323B, TYR324B, TYR351B, TYR358B, TYR378B, TYR605D, VAL299B, VAL304B, VAL336B, VAL344B, VAL356B, VAL366B, VAL381B, VAL559D, VAL574D, VAL575D, VAL606D, VAL616D
• C-D: ARG589D, ASN511C, ASN628D, ASP513C, GLN506C, GLU510C, GLU514C, GLU596D, GLY627D, HIS565D, HIS587D, ILE503C, ILE629D, LEU509C, LEU512C, LEU516C, LEU625D, LYS520C, PHE515C, PHE626D, SER507C, SER517C, THR502C, THR624D