1Q86
crystal structure of cca-phe-cap-biotin bound simultaneously at half occupancy to both the a-site and p- site of the the 50s ribosomal subunit.
Total interactions analyzed 496
Total true interactions 27
Strongest Interaction Chains L-V
Int. Res. 54
Norm. En. per Res. -3.7366
Hub Node E(5)
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Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
C-N 0.0 0.0 -0.1334 -0.1334 3 0 0 29 0 0 2
C-1 -79.1815 -21.2358 -285.783 -386.2003 110 20 12 12159 3 23 24
D-K -24.1413 -23.5474 -46.0687 -93.7574 33 2 0 1887 1 3 0
D-L -8.584 10.2373 -50.3489 -48.6956 38 5 0 2621 0 11 19
D-V -16.9177 6.8371 -41.8136 -51.8942 24 4 0 1339 0 5 5
E-M 0.0 0.0 -0.0024 -0.0024 2 0 0 3 0 0 3
E-P 0.0 5.7458 -44.3643 -38.6185 21 5 0 1668 0 7 6
E-U 0.0 0.0 -13.8998 -13.8998 14 0 0 815 0 3 10
E-Z 0.0 0.0 -0.0117 -0.0117 2 0 0 9 0 0 0
E-2 -2.1955 -11.7012 -44.0514 -57.9482 16 1 0 1385 1 6 6
F-O -14.9314 -1.056 -45.4603 -61.4477 27 12 1 2176 0 13 20
G-K -11.1481 6.9816 -69.1713 -73.3378 26 4 1 2446 0 7 8
H-N -32.2071 -10.2097 -171.523 -213.9398 72 14 3 7813 4 28 27
J-R 0.0 0.0 -0.0434 -0.0434 3 0 0 15 0 0 0
L-V -45.106 -17.6627 -139.009 -201.7777 54 3 3 5736 1 17 20
M-N 0.0 0.0 -0.0131 -0.0131 2 0 0 11 0 0 1
M-P 0.0 0.0 -12.7277 -12.7277 24 0 0 901 0 5 5
M-Z 0.0 0.0 -10.8291 -10.8291 14 0 0 371 0 0 12
M-4 0.0 0.0 -4.6292 -4.6292 5 0 0 199 0 0 2
N-4 0.0 -1.2108 -29.4629 -30.6737 20 8 0 1768 0 4 1
O-R -3.2039 2.8219 -96.686 -97.068 56 6 2 4921 0 10 17
S-Y 0.0 0.0 -0.0865 -0.0865 3 0 0 7 0 0 8
S-3 0.0 0.0 -0.0677 -0.0677 3 0 0 24 0 0 1
T-W 0.0 -3.0212 -56.7077 -59.7289 37 1 4 2943 0 11 13
T-3 -17.2564 -2.6152 -49.4007 -69.2722 26 2 0 2271 0 19 11
U-3 0.0 0.0 -0.033 -0.033 2 0 0 7 0 2 2
2-3 0.0 -5.8128 -46.1696 -51.9824 23 12 0 1747 0 19 15