1Q7Y
crystal structure of ccdap-puromycin bound at the peptidyl transferase center of the 50s ribosomal subunit
Total interactions analyzed 465
Total true interactions 28
Strongest Interaction Chains L-V
Int. Res. 53
Norm. En. per Res. -3.6469
Hub Node E(5)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
C-N 0.0 0.0 -0.0838 -0.0838 3 0 0 21 0 0 2
C-1 -85.4836 -16.6416 -255.193 -357.3182 110 27 12 12320 2 22 24
D-K -29.2963 -22.607 -40.8371 -92.7404 34 6 0 1965 1 4 0
D-L -6.1051 8.8683 -40.0286 -37.2653 38 5 0 2627 0 11 20
D-V -15.3774 6.8346 -36.1566 -44.6994 21 7 0 1390 0 5 5
E-M 0.0 0.0 -0.0028 -0.0028 2 0 0 4 0 0 3
E-P 0.0 4.2574 -36.2623 -32.0049 19 7 0 1629 0 7 6
E-U 0.0 0.8514 -15.7252 -14.8738 14 0 0 791 0 3 10
E-Z 0.0 0.0 -0.0057 -0.0057 2 0 0 6 0 0 1
E-2 0.0 -11.1477 -44.5004 -55.6481 16 0 0 1320 2 5 6
F-O -14.7342 -1.1634 -30.707 -46.6045 27 18 1 2237 0 12 20
G-K -9.5015 7.6554 -68.8006 -70.6466 27 7 1 2506 0 7 7
H-N -45.5717 -11.1342 -182.637 -239.3429 72 12 3 7887 4 28 28
J-R 0.0 0.0 -0.0355 -0.0355 3 0 0 13 0 0 0
L-V -50.5239 -3.2392 -139.522 -193.2851 53 5 3 5699 1 18 19
M-N 0.0 0.0 -0.0142 -0.0142 2 0 0 12 0 0 1
M-P 0.0 0.0 -11.721 -11.721 25 0 0 904 0 5 5
M-Z 0.0 0.0 -9.8319 -9.8319 14 0 0 399 0 0 12
M-4 0.0 0.0 -4.2163 -4.2163 5 0 0 196 0 0 2
N-4 0.0 -1.1823 -31.3311 -32.5134 20 9 0 1825 0 4 1
O-R -6.8851 2.5033 -97.3878 -101.7696 55 5 3 4925 0 9 15
S-Y 0.0 0.0 -0.0968 -0.0968 3 0 0 8 0 0 8
S-2 0.0 0.0 -0.0003 -0.0003 2 0 0 1 0 0 0
S-3 0.0 0.0 -0.0775 -0.0775 4 0 0 25 0 0 1
T-W 0.0 -3.5501 -60.2392 -63.7893 37 4 5 3116 1 11 14
T-3 -17.1444 -0.2886 -43.6417 -61.0746 25 2 0 2177 0 19 11
U-3 0.0 0.0 -0.0434 -0.0434 2 0 0 9 0 2 1
2-3 0.0 -5.1551 -41.7628 -46.9179 23 4 0 1661 0 19 15