1Q5B

lambda-shaped trans and cis interactions of cadherins model based on fitting c-cadherin (1l3w) to 3d map of desmosomes obtained by electron tomography

• Total interactions analyzed: 3
• Total true interactions: 3
• Strongest Interaction:
  • Chains: A-B
  • Int. Res.: 72
  • Norm. En. per Res.: 34.0932
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-20.1717	23.4332	2451.45	2454.7115	72	436	1	10343	1	24	21
A-C	-531.1252	-80.2847	4567.98	3956.5701	98	660	1	16000	6	17	24
B-C	-122.3869	1.2722	3666.64	3545.5253	55	465	2	10024	0	18	24

Interface residues

• A-B: ALA80A, ALA80B, ARG30A, ARG30B, ASN27A, ASN27B, ASN32A, ASN45A, ASN84A, ASP1A, ASP1B, ASP29A, ASP44A, GLN41B, GLU83A, GLU89A, GLU89B, GLU90A, GLU90B, GLU93A, GLU93B, GLY40B, GLY85A, HIS79A, HIS79B, ILE24A, ILE24B, ILE38A, ILE38B, ILE4B, ILE94B, LEU76B, LYS25A, LYS25B, LYS28A, LYS28B, LYS33A, LYS73B, MET92A, MET92B, PHE31A, PRO5B, PRO6B, PRO87A, PRO87B, PRO91A, PRO91B, SER26A, SER26B, SER37A, SER37B, SER77B, SER78A, SER78B, SER82A, SER86A, THR39A, THR39B, THR95B, TRP2B, TRP55A, TYR35A, TYR36A, TYR36B, VAL34A, VAL3A, VAL3B, VAL75B, VAL81A, VAL81B, VAL88A, VAL88B
• A-C: ALA43A, ALA43C, ALA80A, ALA80C, ARG52A, ARG52C, ARG64A, ASN32C, ASN45A, ASN45C, ASN84A, ASN84C, ASP1C, ASP44A, ASP44C, GLN41A, GLN41C, GLN48A, GLN48C, GLU54C, GLU56C, GLU83C, GLU89A, GLU89C, GLU90A, GLU90C, GLU93A, GLU93C, GLY40A, GLY40C, GLY42A, GLY49A, GLY58C, GLY85A, GLY85C, HIS79A, HIS79C, ILE24C, ILE38A, ILE38C, ILE53A, ILE53C, ILE94A, ILE94C, LEU61A, LEU76A, LEU76C, LYS28C, LYS33C, LYS73A, MET60C, MET92A, MET92C, PHE17A, PHE51A, PHE51C, PRO18A, PRO46A, PRO46C, PRO47A, PRO65A, PRO87A, PRO87C, PRO91A, PRO91C, SER26C, SER37A, SER37C, SER77A, SER77C, SER78A, SER78C, SER82C, SER86A, SER86C, THR39A, THR39C, THR57C, THR63A, THR95A, THR95C, TRP55A, TRP55C, TRP59C, TYR35A, TYR35C, TYR36A, TYR36C, TYR71A, TYR74A, VAL34C, VAL3C, VAL50A, VAL75A, VAL75C, VAL81A, VAL81C, VAL88C
• B-C: ALA80B, ALA80C, ARG30B, ARG30C, ASN27B, ASN27C, ASN32B, ASN84B, ASP1C, ASP29B, ASP29C, GLN23C, GLU56B, GLU83B, GLU89B, GLU89C, GLU90B, GLU90C, GLU93C, GLY85B, HIS79B, ILE24C, ILE4C, LYS25B, LYS25C, LYS28B, LYS28C, LYS33B, MET92B, MET92C, PHE31B, PRO5C, PRO6C, PRO87B, PRO91B, PRO91C, SER26B, SER26C, SER37B, SER78B, SER78C, SER82B, SER86B, TRP2C, TRP55B, TYR35B, TYR36B, TYR36C, VAL22C, VAL34B, VAL34C, VAL3C, VAL81B, VAL88B, VAL88C