1PYH

crystal structure of rc-lh1 core complex from rhodopseudomonas palustris

• Total interactions analyzed: 561
• Total true interactions: 47
• Strongest Interaction:
  • Chains: A-C
  • Int. Res.: 126
  • Norm. En. per Res.: -1.649
• Hub Node: A(11)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-58.5062	0.0	-272.848	-331.3542	281	7	0	19007	0	0	0
A-C	-72.639	0.0	-135.139	-207.778	126	7	0	8147	0	0	0
A-D	0.0	0.0	-9.6133	-9.6133	25	0	0	895	0	0	0
A-L	0.0	0.0	-0.0008	-0.0008	2	0	0	2	0	0	0
A-V	-2.2713	0.0	-6.934	-9.2053	13	9	0	748	0	0	0
A-X	0.0	0.0	-2.5272	-2.5272	9	0	0	284	0	0	0
A-Z	0.0	0.0	-5.0383	-5.0383	15	15	0	913	0	0	0
A-1	0.0	0.0	-0.9739	-0.9739	10	0	0	158	0	0	0
A-3	0.0	0.0	-8.9631	-8.9631	14	0	0	467	0	0	0
A-5	0.0	0.0	-6.9368	-6.9368	27	0	0	828	0	0	0
A-7	0.0	0.0	-16.0671	-16.0671	50	10	0	2536	0	0	0
B-C	-26.1152	0.0	-135.242	-161.3572	181	3	0	9743	0	0	0
B-H	0.0	0.0	-0.0003	-0.0003	2	0	0	1	0	0	0
B-L	0.0	0.0	-0.824	-0.824	9	0	0	162	0	0	0
B-N	0.0	0.0	-6.9695	-6.9695	13	0	0	507	0	0	0
B-P	0.0	0.0	-1.7475	-1.7475	38	3	0	873	0	0	0
B-R	0.0	0.0	-0.6662	-0.6662	29	0	0	222	0	0	0
B-T	0.0	0.0	-7.0344	-7.0344	14	1	0	525	0	0	0
B-V	0.0	0.0	-7.3434	-7.3434	16	0	0	546	0	0	0
B-Z	0.0	0.0	-0.0003	-0.0003	2	0	0	1	0	0	0
C-D	0.0	0.0	-0.2942	-0.2942	7	0	0	84	0	0	0
C-F	0.0	0.0	19.427	19.427	15	16	0	1328	0	0	0
C-H	0.0	0.0	-3.2601	-3.2601	22	0	0	347	0	0	0
C-J	0.0	0.0	10.7036	10.7036	21	4	0	902	0	0	0
C-Z	0.0	0.0	-0.1165	-0.1165	3	0	0	41	0	0	0
C-1	0.0	0.0	-1.2162	-1.2162	5	0	0	127	0	0	0
C-7	0.0	0.0	-0.0704	-0.0704	9	0	0	47	0	0	0
D-E	0.0	0.0	-0.0007	-0.0007	2	0	0	2	0	0	0
D-F	0.0	0.0	-0.0017	-0.0017	7	0	0	5	0	0	0
D-7	0.0	0.0	-0.414	-0.414	11	0	0	98	0	0	0
F-H	0.0	0.0	-0.0009	-0.0009	4	0	0	3	0	0	0
H-J	0.0	0.0	-0.114	-0.114	8	0	0	41	0	0	0
J-K	0.0	0.0	-0.0003	-0.0003	2	0	0	1	0	0	0
L-M	0.0	0.0	-0.0018	-0.0018	3	0	0	5	0	0	0
L-N	0.0	0.0	-0.496	-0.496	14	0	0	126	0	0	0
N-P	0.0	0.0	-0.774	-0.774	24	0	0	228	0	0	0
P-R	0.0	0.0	-0.0559	-0.0559	7	0	0	22	0	0	0
T-V	0.0	0.0	-0.7547	-0.7547	24	0	0	254	0	0	0
V-X	0.0	0.0	-0.0115	-0.0115	2	0	0	6	0	0	0
X-Y	0.0	0.0	-0.1499	-0.1499	8	0	0	53	0	0	0
Z-1	0.0	0.0	-0.6764	-0.6764	18	0	0	210	0	0	0
1-2	0.0	0.0	-0.001	-0.001	4	0	0	3	0	0	0
1-3	0.0	0.0	-0.0035	-0.0035	5	0	0	5	0	0	0
3-5	0.0	0.0	-0.011	-0.011	6	0	0	13	0	0	0
5-6	0.0	0.0	-0.0889	-0.0889	9	0	0	36	0	0	0
5-7	0.0	0.0	-0.0769	-0.0769	7	0	0	31	0	0	0
7-8	0.0	0.0	-0.0037	-0.0037	4	0	0	5	0	0	0

Interface residues

• A-B: UNK100A, UNK103A, UNK104A, UNK105A, UNK106A, UNK107A, UNK108A, UNK10A, UNK110A, UNK111A, UNK112A, UNK113A, UNK114A, UNK115A, UNK116A, UNK117A, UNK118A, UNK119A, UNK120A, UNK121A, UNK123A, UNK124A, UNK129B, UNK132B, UNK133B, UNK134B, UNK135B, UNK136B, UNK137B, UNK138B, UNK139B, UNK140B, UNK141B, UNK142B, UNK143B, UNK144B, UNK145B, UNK146B, UNK147B, UNK148B, UNK149B, UNK150B, UNK151A, UNK152B, UNK153A, UNK153B, UNK154A, UNK155A, UNK157A, UNK158A, UNK165A, UNK166A, UNK167A, UNK168A, UNK169A, UNK179A, UNK179B, UNK17B, UNK180A, UNK180B, UNK181A, UNK182A, UNK182B, UNK183A, UNK183B, UNK184A, UNK184B, UNK185A, UNK186A, UNK186B, UNK187A, UNK187B, UNK188A, UNK188B, UNK189A, UNK18B, UNK190A, UNK191A, UNK192A, UNK193A, UNK194A, UNK195A, UNK195B, UNK196A, UNK196B, UNK197A, UNK197B, UNK198A, UNK198B, UNK199A, UNK19B, UNK1A, UNK200A, UNK201A, UNK202A, UNK203A, UNK204A, UNK205A, UNK206A, UNK207A, UNK208A, UNK208B, UNK209A, UNK209B, UNK20B, UNK210A, UNK210B, UNK211A, UNK211B, UNK212A, UNK212B, UNK213A, UNK213B, UNK214A, UNK214B, UNK215A, UNK215B, UNK216A, UNK216B, UNK217A, UNK217B, UNK218A, UNK218B, UNK219A, UNK219B, UNK21B, UNK220A, UNK220B, UNK221A, UNK221B, UNK222A, UNK222B, UNK223A, UNK223B, UNK224A, UNK224B, UNK225A, UNK225B, UNK226A, UNK226B, UNK227A, UNK227B, UNK228A, UNK228B, UNK229A, UNK229B, UNK22B, UNK230A, UNK231A, UNK231B, UNK232A, UNK232B, UNK233A, UNK233B, UNK234A, UNK234B, UNK235A, UNK235B, UNK236A, UNK236B, UNK237A, UNK238A, UNK238B, UNK239A, UNK239B, UNK240A, UNK241A, UNK241B, UNK243B, UNK244B, UNK245B, UNK246B, UNK247B, UNK248B, UNK249B, UNK24B, UNK250B, UNK251B, UNK252B, UNK253B, UNK254B, UNK255B, UNK256B, UNK257B, UNK258B, UNK259B, UNK25A, UNK260A, UNK262B, UNK263A, UNK263B, UNK264B, UNK265B, UNK266A, UNK266B, UNK267A, UNK267B, UNK268A, UNK268B, UNK269A, UNK269B, UNK26A, UNK270B, UNK271A, UNK271B, UNK272A, UNK272B, UNK273A, UNK273B, UNK274A, UNK274B, UNK275A, UNK275B, UNK276A, UNK276B, UNK277A, UNK277B, UNK278A, UNK279A, UNK27A, UNK280A, UNK281A, UNK28A, UNK28B, UNK29A, UNK29B, UNK2A, UNK2B, UNK30A, UNK30B, UNK31A, UNK32B, UNK33B, UNK39B, UNK3A, UNK3B, UNK40B, UNK41B, UNK42B, UNK43B, UNK44B, UNK45B, UNK46B, UNK47B, UNK48B, UNK49B, UNK4A, UNK4B, UNK50B, UNK51B, UNK52B, UNK53B, UNK56B, UNK5A, UNK5B, UNK6A, UNK6B, UNK74B, UNK75B, UNK76B, UNK77B, UNK78B, UNK79B, UNK7A, UNK7B, UNK80B, UNK81B, UNK82B, UNK83B, UNK84B, UNK85B, UNK86B, UNK87B, UNK88B, UNK89B, UNK8B, UNK90B, UNK91B, UNK92B, UNK93B, UNK9A
• A-C: UNK100C, UNK104C, UNK107A, UNK107C, UNK108A, UNK108C, UNK109A, UNK109C, UNK10A, UNK110A, UNK110C, UNK111A, UNK111C, UNK112A, UNK112C, UNK113A, UNK113C, UNK114A, UNK114C, UNK115C, UNK11A, UNK123C, UNK124C, UNK125C, UNK126C, UNK127C, UNK12A, UNK130C, UNK13A, UNK14A, UNK171C, UNK172C, UNK173C, UNK175C, UNK198A, UNK199A, UNK1A, UNK200A, UNK202A, UNK203A, UNK204A, UNK205A, UNK206A, UNK207A, UNK208A, UNK209A, UNK20A, UNK210A, UNK211A, UNK213A, UNK225A, UNK226A, UNK227A, UNK228A, UNK22A, UNK234C, UNK235C, UNK237C, UNK238C, UNK239C, UNK23A, UNK240C, UNK241C, UNK242C, UNK24A, UNK25A, UNK26A, UNK27A, UNK28A, UNK29A, UNK2A, UNK30A, UNK31A, UNK38C, UNK39C, UNK3A, UNK40C, UNK41C, UNK42C, UNK43C, UNK44C, UNK45C, UNK46C, UNK47C, UNK48C, UNK49C, UNK4A, UNK50C, UNK51C, UNK52C, UNK53C, UNK54C, UNK5A, UNK62C, UNK63C, UNK64C, UNK65C, UNK66C, UNK67C, UNK68C, UNK69C, UNK6A, UNK70C, UNK71C, UNK78C, UNK79C, UNK7A, UNK80C, UNK81C, UNK83C, UNK84C, UNK85C, UNK86C, UNK87C, UNK88C, UNK89C, UNK8A, UNK90C, UNK91C, UNK94C, UNK95C, UNK96C, UNK97C, UNK98C, UNK99C, UNK9A
• A-D: UNK14D, UNK1A, UNK26A, UNK27A, UNK29D, UNK31D, UNK32D, UNK33D, UNK34D, UNK35D, UNK36D, UNK37D, UNK47A, UNK49A, UNK50A, UNK51A, UNK52A, UNK53A, UNK54A, UNK55A, UNK56A, UNK57A, UNK58A, UNK59A, UNK60A
• A-L: UNK13L, UNK202A
• A-V: UNK269A, UNK270A, UNK271A, UNK272A, UNK273A, UNK274A, UNK275A, UNK32V, UNK33V, UNK34V, UNK35V, UNK36V, UNK37V
• A-X: UNK268A, UNK269A, UNK270A, UNK271A, UNK32X, UNK34X, UNK35X, UNK36X, UNK37X
• A-Z: UNK250A, UNK251A, UNK252A, UNK253A, UNK254A, UNK255A, UNK256A, UNK257A, UNK262A, UNK32Z, UNK33Z, UNK34Z, UNK35Z, UNK36Z, UNK37Z
• A-1: UNK137A, UNK138A, UNK139A, UNK140A, UNK253A, UNK254A, UNK321, UNK331, UNK361, UNK371
• A-3: UNK143, UNK16A, UNK17A, UNK18A, UNK323, UNK333, UNK353, UNK363, UNK373, UNK73A, UNK74A, UNK75A, UNK76A, UNK77A
• A-5: UNK135, UNK145, UNK155, UNK175, UNK17A, UNK185, UNK18A, UNK19A, UNK20A, UNK21A, UNK22A, UNK325, UNK335, UNK355, UNK365, UNK375, UNK77A, UNK78A, UNK79A, UNK80A, UNK81A, UNK83A, UNK84A, UNK85A, UNK87A, UNK88A, UNK91A
• A-7: UNK137, UNK147, UNK177, UNK187, UNK20A, UNK217, UNK21A, UNK227, UNK22A, UNK23A, UNK247, UNK24A, UNK257, UNK25A, UNK267, UNK26A, UNK287, UNK297, UNK307, UNK317, UNK31A, UNK327, UNK337, UNK347, UNK357, UNK367, UNK36A, UNK377, UNK39A, UNK40A, UNK41A, UNK42A, UNK43A, UNK44A, UNK45A, UNK46A, UNK47A, UNK48A, UNK49A, UNK50A, UNK51A, UNK52A, UNK53A, UNK54A, UNK55A, UNK56A, UNK57A, UNK80A, UNK81A, UNK85A
• B-C: UNK10B, UNK10C, UNK110C, UNK111C, UNK112C, UNK113C, UNK114C, UNK115C, UNK116C, UNK117C, UNK118C, UNK119C, UNK11B, UNK11C, UNK121C, UNK122C, UNK123C, UNK124C, UNK125C, UNK126C, UNK12B, UNK12C, UNK134C, UNK137C, UNK138C, UNK139C, UNK13B, UNK13C, UNK140C, UNK141C, UNK142C, UNK143C, UNK144C, UNK145C, UNK146C, UNK147C, UNK148C, UNK14B, UNK14C, UNK15B, UNK15C, UNK167C, UNK168C, UNK169C, UNK16B, UNK16C, UNK170C, UNK171C, UNK172C, UNK173C, UNK174C, UNK175C, UNK176C, UNK177C, UNK17B, UNK17C, UNK18C, UNK191C, UNK192C, UNK193C, UNK194C, UNK195C, UNK196C, UNK197C, UNK198C, UNK199B, UNK199C, UNK19B, UNK1B, UNK200B, UNK201B, UNK204B, UNK204C, UNK205C, UNK206C, UNK207C, UNK20B, UNK20C, UNK21B, UNK224B, UNK225B, UNK226B, UNK227B, UNK227C, UNK228B, UNK228C, UNK229B, UNK230B, UNK230C, UNK231C, UNK232C, UNK233B, UNK233C, UNK234C, UNK235C, UNK236B, UNK237B, UNK237C, UNK238B, UNK238C, UNK239B, UNK240B, UNK241B, UNK241C, UNK242B, UNK243B, UNK244B, UNK245B, UNK246B, UNK247B, UNK249B, UNK24C, UNK258B, UNK259B, UNK260B, UNK261B, UNK262B, UNK263B, UNK264B, UNK265B, UNK266B, UNK267B, UNK268B, UNK269B, UNK271B, UNK272B, UNK275B, UNK279B, UNK27C, UNK282B, UNK283B, UNK285B, UNK286B, UNK287B, UNK289B, UNK28C, UNK290B, UNK291B, UNK292B, UNK297B, UNK298B, UNK2B, UNK300B, UNK301B, UNK302B, UNK30C, UNK31C, UNK32C, UNK33C, UNK34C, UNK35B, UNK35C, UNK36B, UNK36C, UNK37B, UNK37C, UNK38B, UNK38C, UNK39C, UNK3B, UNK40B, UNK40C, UNK41B, UNK43B, UNK44B, UNK45B, UNK46B, UNK4B, UNK56C, UNK5B, UNK64C, UNK65C, UNK66C, UNK67C, UNK70C, UNK72C, UNK73C, UNK74C, UNK75C, UNK8B, UNK9B
• B-H: UNK301B, UNK36H
• B-L: UNK166B, UNK167B, UNK168B, UNK169B, UNK289B, UNK32L, UNK33L, UNK36L, UNK37L
• B-N: UNK101B, UNK102B, UNK103B, UNK104B, UNK105B, UNK106B, UNK138B, UNK14N, UNK166B, UNK33N, UNK35N, UNK36N, UNK37N
• B-P: UNK104B, UNK105B, UNK106B, UNK107B, UNK108B, UNK109B, UNK112B, UNK113B, UNK114B, UNK116B, UNK117B, UNK120B, UNK124B, UNK12P, UNK13P, UNK14P, UNK15P, UNK17P, UNK18P, UNK19P, UNK21P, UNK22P, UNK25B, UNK25P, UNK27B, UNK28B, UNK29P, UNK32P, UNK33P, UNK35P, UNK36P, UNK37P, UNK53B, UNK54B, UNK55B, UNK57B, UNK58B, UNK62B
• B-R: UNK109B, UNK114B, UNK13R, UNK14R, UNK18R, UNK21R, UNK22R, UNK25R, UNK27B, UNK28B, UNK28R, UNK29B, UNK29R, UNK30B, UNK32R, UNK33R, UNK35R, UNK36R, UNK37R, UNK52B, UNK57B, UNK61B, UNK64B, UNK65B, UNK68B, UNK69B, UNK72B, UNK73B, UNK76B
• B-T: UNK32T, UNK33T, UNK34T, UNK35T, UNK36T, UNK37T, UNK75B, UNK76B, UNK78B, UNK79B, UNK80B, UNK81B, UNK82B, UNK85B
• B-V: UNK14V, UNK31V, UNK32V, UNK33V, UNK34B, UNK34V, UNK35V, UNK36V, UNK37V, UNK81B, UNK82B, UNK83B, UNK84B, UNK85B, UNK86B, UNK87B
• B-Z: UNK14Z, UNK1B
• C-D: UNK12D, UNK13D, UNK14D, UNK51C, UNK52C, UNK93C, UNK94C
• C-F: UNK12F, UNK13F, UNK14F, UNK15F, UNK16F, UNK17F, UNK18F, UNK50C, UNK51C, UNK52C, UNK53C, UNK54C, UNK55C, UNK56C, UNK57C
• C-H: UNK10C, UNK11C, UNK12H, UNK13H, UNK14H, UNK15H, UNK17H, UNK18C, UNK18H, UNK22C, UNK25H, UNK29C, UNK29H, UNK33C, UNK33H, UNK36H, UNK37H, UNK56C, UNK57C, UNK58C, UNK59C, UNK60C
• C-J: UNK10C, UNK11C, UNK12C, UNK13C, UNK14C, UNK15C, UNK16C, UNK18C, UNK19C, UNK23C, UNK25J, UNK28J, UNK29J, UNK30J, UNK31J, UNK32J, UNK33J, UNK34J, UNK35J, UNK36J, UNK37J
• C-Z: UNK13Z, UNK199C, UNK200C
• C-1: UNK121, UNK131, UNK141, UNK249C, UNK250C
• C-7: UNK127, UNK137, UNK147, UNK91C, UNK92C, UNK93C, UNK94C, UNK95C, UNK96C
• D-E: UNK15E, UNK16D
• D-F: UNK24F, UNK26D, UNK28F, UNK32F, UNK33D, UNK35F, UNK37D
• D-7: UNK24D, UNK267, UNK28D, UNK297, UNK31D, UNK32D, UNK337, UNK347, UNK35D, UNK36D, UNK377
• F-H: UNK26F, UNK28H, UNK33F, UNK35H
• H-J: UNK26H, UNK28J, UNK32J, UNK33H, UNK34H, UNK35J, UNK36J, UNK37H
• J-K: UNK33K, UNK34J
• L-M: UNK12L, UNK15M, UNK16L
• L-N: UNK12L, UNK13L, UNK13N, UNK14L, UNK14N, UNK15L, UNK16L, UNK17N, UNK18L, UNK18N, UNK19L, UNK21N, UNK26L, UNK28N
• N-P: UNK12N, UNK13N, UNK13P, UNK14N, UNK14P, UNK15N, UNK16N, UNK17P, UNK18N, UNK19N, UNK20P, UNK21P, UNK22N, UNK23N, UNK24P, UNK25P, UNK26N, UNK28P, UNK29N, UNK30N, UNK32P, UNK33N, UNK35P, UNK37N
• P-R: UNK24R, UNK26P, UNK32R, UNK33P, UNK35R, UNK36R, UNK37P
• T-V: UNK12T, UNK13V, UNK14T, UNK14V, UNK15T, UNK16V, UNK17V, UNK18T, UNK18V, UNK19T, UNK20V, UNK21V, UNK22T, UNK24V, UNK25T, UNK25V, UNK26T, UNK28V, UNK29T, UNK31V, UNK32V, UNK33T, UNK35V, UNK37T
• V-X: UNK35X, UNK37V
• X-Y: UNK11Y, UNK12X, UNK12Y, UNK15Y, UNK16X, UNK19X, UNK20X, UNK8Y
• Z-1: UNK211, UNK22Z, UNK23Z, UNK241, UNK251, UNK26Z, UNK271, UNK27Z, UNK281, UNK29Z, UNK30Z, UNK311, UNK321, UNK33Z, UNK34Z, UNK351, UNK361, UNK37Z
• 1-2: UNK222, UNK231, UNK332, UNK341
• 1-3: UNK141, UNK151, UNK173, UNK221, UNK243
• 3-5: UNK143, UNK153, UNK175, UNK183, UNK223, UNK245
• 5-6: UNK116, UNK125, UNK126, UNK156, UNK165, UNK195, UNK226, UNK235, UNK86
• 5-7: UNK287, UNK295, UNK317, UNK335, UNK357, UNK365, UNK375
• 7-8: UNK118, UNK127, UNK228, UNK237