1PNX
crystal structure of the wild type ribosome from e. coli, 30s subunit of 70s ribosome. this file, 1pnx, contains only molecules of the 30s ribosomal subunit. the 50s subunit is in the pdb file 1pny.
Total interactions analyzed 190
Total true interactions 24
Strongest Interaction Chains F-R
Int. Res. 89
Norm. En. per Res. -4.5263
Hub Node C(4)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
B-C 0.0 0.0 -3.3288 -3.3288 4 1 0 191 0 1 3
B-E 0.0 0.0 -0.0043 -0.0043 2 0 0 5 0 0 1
B-H -5.4645 -6.3769 -19.1736 -31.0151 26 0 0 1439 0 12 12
C-D 0.0 0.0 0.1771 0.1771 5 3 0 151 0 0 7
C-E 0.0 -28.961 -9.4192 -38.3802 12 0 0 507 3 4 3
C-J 0.0 7.9625 -29.8914 -21.9289 60 38 3 5015 0 19 26
C-N -28.8167 8.3864 -192.661 -213.0913 73 15 3 9052 0 17 38
D-E -17.3593 20.8683 213.957 217.466 63 62 0 5612 3 16 16
E-H -12.0137 -5.74 -38.6072 -56.3609 58 20 2 4837 2 34 37
F-O 0.0 0.0 -2.6202 -2.6202 7 0 0 218 0 5 5
F-R -71.983 -49.8343 -281.026 -402.8433 89 28 8 10974 5 13 22
G-I 0.0 2.1891 -22.7635 -20.5744 34 4 3 1974 0 5 8
G-K -11.5279 4.9357 -6.3367 -12.9289 23 12 1 1716 0 2 6
H-L 0.0 0.0 -7.4558 -7.4558 11 4 0 505 0 0 1
H-Q -5.3899 7.9464 84.8473 87.4038 16 18 0 1702 0 2 9
I-J -17.5953 -0.8099 -37.5491 -55.9542 20 9 0 1519 0 10 15
I-M 0.0 0.7984 -3.1201 -2.3217 5 0 0 275 0 0 5
I-N 0.0 0.0 -18.389 -18.389 9 1 0 553 0 0 0
J-N -28.1031 -28.8129 -7.5658 -64.4818 54 83 8 9671 6 15 40
K-R -33.6075 -35.9672 -14.2499 -83.8247 23 1 0 927 2 11 11
L-Q 0.0 0.0 -27.5377 -27.5377 22 1 4 1829 0 0 7
M-S 0.0 53.6136 -53.682 -0.0684 50 32 2 4800 0 9 24
N-S 0.0 0.0 -0.001 -0.001 4 0 0 3 0 1 0
O-Q 0.0 -1.0798 -0.3517 -1.4315 9 0 0 94 0 6 6