1PDM

fitting of gp8 structure into the cryoem reconstruction of the bacteriophage t4 baseplate

• Total interactions analyzed: 66
• Total true interactions: 6
• Strongest Interaction:
  • Chains: A-B
  • Int. Res.: 103
  • Norm. En. per Res.: -0.1314
• Hub Node: A(1)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	0.0	0.0	-13.5301	-13.5301	103	0	0	2087	0	0	0
C-D	0.0	0.0	-13.5317	-13.5317	105	0	0	2112	0	0	0
E-F	0.0	0.0	-13.5389	-13.5389	106	0	0	2085	0	0	0
G-H	0.0	0.0	-13.5301	-13.5301	103	0	0	2087	0	0	0
I-J	0.0	0.0	-13.5317	-13.5317	105	0	0	2112	0	0	0
K-L	0.0	0.0	-13.5389	-13.5389	106	0	0	2085	0	0	0

Interface residues

• A-B: ALA10A, ALA10B, ALA57A, ALA57B, ARG17A, ARG17B, ARG304A, ARG304B, ARG315A, ARG315B, ARG9A, ARG9B, ASN23A, ASN23B, ASN26A, ASN26B, ASN286A, ASN286B, ASN289A, ASN289B, ASN314A, ASN314B, ASP234A, ASP234B, ASP235A, ASP235B, ASP33A, ASP63A, ASP63B, GLN232A, GLN232B, GLN233A, GLN233B, GLU19A, GLU19B, GLU308A, GLU308B, GLU313A, GLU313B, GLY237B, GLY307A, GLY307B, GLY55A, GLY55B, HIS305A, HIS305B, ILE11A, ILE11B, ILE310A, ILE310B, ILE7A, ILE7B, LEU229A, LEU279B, LYS15A, LYS15B, LYS20A, LYS20B, LYS34A, MET303A, MET303B, MET309A, MET309B, MET312A, MET312B, PHE16A, PHE16B, PHE24A, PHE24B, PHE332B, PHE56A, PHE56B, PRO278B, PRO285A, PRO285B, PRO316A, PRO316B, PRO58A, PRO58B, PRO59A, PRO59B, PRO61A, PRO61B, SER14A, SER14B, SER27A, SER27B, SER306A, SER306B, THR13A, THR13B, THR276A, TRP231A, TYR240A, TYR240B, TYR311A, TYR311B, TYR60A, TYR60B, TYR8A, TYR8B, VAL12A, VAL12B
• C-D: ALA10C, ALA10D, ALA57C, ALA57D, ARG17C, ARG17D, ARG304C, ARG304D, ARG315C, ARG315D, ARG9C, ARG9D, ASN23C, ASN23D, ASN26C, ASN26D, ASN286C, ASN286D, ASN289C, ASN289D, ASN314C, ASN314D, ASP234C, ASP234D, ASP235C, ASP235D, ASP287C, ASP33C, ASP63C, ASP63D, GLN232C, GLN232D, GLN233C, GLN233D, GLU19C, GLU19D, GLU308C, GLU308D, GLU313C, GLU313D, GLY237D, GLY307C, GLY307D, GLY55C, GLY55D, HIS305C, HIS305D, ILE11C, ILE11D, ILE310C, ILE310D, ILE7C, ILE7D, LEU229C, LEU279D, LYS15C, LYS15D, LYS20C, LYS20D, LYS34C, MET303C, MET303D, MET309C, MET309D, MET312C, MET312D, PHE16C, PHE16D, PHE24C, PHE24D, PHE332D, PHE56C, PHE56D, PRO278D, PRO285C, PRO285D, PRO316C, PRO316D, PRO58C, PRO58D, PRO59C, PRO59D, PRO61C, PRO61D, SER14C, SER14D, SER27C, SER27D, SER306C, SER306D, SER64D, THR13C, THR13D, THR276D, THR62D, TYR240C, TYR240D, TYR311C, TYR311D, TYR60C, TYR60D, TYR8C, TYR8D, VAL12C, VAL12D
• E-F: ALA10E, ALA10F, ALA57E, ALA57F, ARG17E, ARG17F, ARG304E, ARG304F, ARG315E, ARG315F, ARG9E, ARG9F, ASN23E, ASN23F, ASN26E, ASN26F, ASN286E, ASN286F, ASN289E, ASN289F, ASN314E, ASN314F, ASP234E, ASP234F, ASP235E, ASP235F, ASP287E, ASP33E, ASP63E, ASP63F, GLN232E, GLN232F, GLN233E, GLN233F, GLU19E, GLU19F, GLU308E, GLU308F, GLU313E, GLU313F, GLY307E, GLY307F, GLY55E, GLY55F, HIS305E, HIS305F, ILE11E, ILE11F, ILE310E, ILE310F, ILE7E, ILE7F, LEU279F, LYS15E, LYS15F, LYS20E, LYS20F, LYS34E, MET21F, MET303E, MET303F, MET309E, MET309F, MET312E, MET312F, PHE16E, PHE16F, PHE24E, PHE24F, PHE332F, PHE334E, PHE56E, PHE56F, PRO278F, PRO285E, PRO285F, PRO316E, PRO316F, PRO58E, PRO58F, PRO59E, PRO59F, PRO61E, PRO61F, SER14E, SER14F, SER27E, SER27F, SER306E, SER306F, THR13E, THR13F, THR276E, THR276F, THR62F, TRP231E, TYR240E, TYR240F, TYR311E, TYR311F, TYR60E, TYR60F, TYR8E, TYR8F, VAL12E, VAL12F
• G-H: ALA10G, ALA10H, ALA57G, ALA57H, ARG17G, ARG17H, ARG304G, ARG304H, ARG315G, ARG315H, ARG9G, ARG9H, ASN23G, ASN23H, ASN26G, ASN26H, ASN286G, ASN286H, ASN289G, ASN289H, ASN314G, ASN314H, ASP234G, ASP234H, ASP235G, ASP235H, ASP33G, ASP63G, ASP63H, GLN232G, GLN232H, GLN233G, GLN233H, GLU19G, GLU19H, GLU308G, GLU308H, GLU313G, GLU313H, GLY237H, GLY307G, GLY307H, GLY55G, GLY55H, HIS305G, HIS305H, ILE11G, ILE11H, ILE310G, ILE310H, ILE7G, ILE7H, LEU229G, LEU279H, LYS15G, LYS15H, LYS20G, LYS20H, LYS34G, MET303G, MET303H, MET309G, MET309H, MET312G, MET312H, PHE16G, PHE16H, PHE24G, PHE24H, PHE332H, PHE56G, PHE56H, PRO278H, PRO285G, PRO285H, PRO316G, PRO316H, PRO58G, PRO58H, PRO59G, PRO59H, PRO61G, PRO61H, SER14G, SER14H, SER27G, SER27H, SER306G, SER306H, THR13G, THR13H, THR276G, TRP231G, TYR240G, TYR240H, TYR311G, TYR311H, TYR60G, TYR60H, TYR8G, TYR8H, VAL12G, VAL12H
• I-J: ALA10I, ALA10J, ALA57I, ALA57J, ARG17I, ARG17J, ARG304I, ARG304J, ARG315I, ARG315J, ARG9I, ARG9J, ASN23I, ASN23J, ASN26I, ASN26J, ASN286I, ASN286J, ASN289I, ASN289J, ASN314I, ASN314J, ASP234I, ASP234J, ASP235I, ASP235J, ASP287I, ASP33I, ASP63I, ASP63J, GLN232I, GLN232J, GLN233I, GLN233J, GLU19I, GLU19J, GLU308I, GLU308J, GLU313I, GLU313J, GLY237J, GLY307I, GLY307J, GLY55I, GLY55J, HIS305I, HIS305J, ILE11I, ILE11J, ILE310I, ILE310J, ILE7I, ILE7J, LEU229I, LEU279J, LYS15I, LYS15J, LYS20I, LYS20J, LYS34I, MET303I, MET303J, MET309I, MET309J, MET312I, MET312J, PHE16I, PHE16J, PHE24I, PHE24J, PHE332J, PHE56I, PHE56J, PRO278J, PRO285I, PRO285J, PRO316I, PRO316J, PRO58I, PRO58J, PRO59I, PRO59J, PRO61I, PRO61J, SER14I, SER14J, SER27I, SER27J, SER306I, SER306J, SER64J, THR13I, THR13J, THR276J, THR62J, TYR240I, TYR240J, TYR311I, TYR311J, TYR60I, TYR60J, TYR8I, TYR8J, VAL12I, VAL12J
• K-L: ALA10K, ALA10L, ALA57K, ALA57L, ARG17K, ARG17L, ARG304K, ARG304L, ARG315K, ARG315L, ARG9K, ARG9L, ASN23K, ASN23L, ASN26K, ASN26L, ASN286K, ASN286L, ASN289K, ASN289L, ASN314K, ASN314L, ASP234K, ASP234L, ASP235K, ASP235L, ASP287K, ASP33K, ASP63K, ASP63L, GLN232K, GLN232L, GLN233K, GLN233L, GLU19K, GLU19L, GLU308K, GLU308L, GLU313K, GLU313L, GLY307K, GLY307L, GLY55K, GLY55L, HIS305K, HIS305L, ILE11K, ILE11L, ILE310K, ILE310L, ILE7K, ILE7L, LEU279L, LYS15K, LYS15L, LYS20K, LYS20L, LYS34K, MET21L, MET303K, MET303L, MET309K, MET309L, MET312K, MET312L, PHE16K, PHE16L, PHE24K, PHE24L, PHE332L, PHE334K, PHE56K, PHE56L, PRO278L, PRO285K, PRO285L, PRO316K, PRO316L, PRO58K, PRO58L, PRO59K, PRO59L, PRO61K, PRO61L, SER14K, SER14L, SER27K, SER27L, SER306K, SER306L, THR13K, THR13L, THR276K, THR276L, THR62L, TRP231K, TYR240K, TYR240L, TYR311K, TYR311L, TYR60K, TYR60L, TYR8K, TYR8L, VAL12K, VAL12L