1OYR

crystal structure of the phosphorolytic exoribonuclease rnase ph from bacillus subtilis

• Total interactions analyzed: 15
• Total true interactions: 12
• Strongest Interaction:
  • Chains: A-F
  • Int. Res.: 125
  • Norm. En. per Res.: -5.5355
• Hub Node: A(4)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-122.6331	-127.5539	-237.282	-487.469	120	44	3	12515	6	56	45
A-C	0.0	0.0	-0.5844	-0.5844	6	0	0	102	0	1	4
A-E	0.0	0.0	-0.6891	-0.6891	6	0	0	101	0	0	4
A-F	-54.8015	-305.9156	-331.225	-691.942	125	23	4	14396	17	51	36
B-C	-41.3635	-301.2256	-333.105	-675.6941	125	35	4	14312	15	50	35
B-D	0.0	0.0	-0.7726	-0.7726	7	0	0	110	0	1	5
B-F	0.0	0.0	-0.453	-0.453	6	0	0	85	0	1	4
C-D	-129.3325	-98.2292	-299.371	-526.9328	124	18	5	13179	5	52	45
C-E	0.0	0.0	-1.3851	-1.3851	7	0	0	167	0	1	5
D-E	-56.7778	-326.7676	-202.504	-586.0493	128	105	4	16426	14	49	41
D-F	-3.1144	0.0	-2.9116	-6.0261	7	0	0	220	0	1	5
E-F	-129.9283	-94.0493	-297.522	-521.4997	122	30	6	13286	1	53	43

Interface residues

• A-B: ALA100A, ALA100B, ALA208A, ALA208B, ALA222A, ALA222B, ALA97A, ALA97B, ARG126A, ARG126B, ARG197A, ARG197B, ARG212A, ARG212B, ARG86A, ARG86B, ARG92A, ARG92B, ARG96A, ARG96B, ARG99A, ARG99B, ASN189A, ASN189B, ASN216A, ASN216B, ASP157A, ASP157B, ASP187A, ASP187B, ASP214A, ASP214B, GLN202A, GLN202B, GLN91A, GLN91B, GLU185A, GLU185B, GLU200A, GLU200B, GLU206A, GLU206B, GLU207A, GLU207B, GLU213A, GLU213B, GLU223A, GLU223B, GLU89A, GLU89B, GLY196A, GLY196B, GLY203A, GLY203B, GLY205A, GLY205B, GLY217A, GLY217B, GLY220A, GLY220B, GLY81A, GLY81B, GLY85A, GLY85B, ILE166A, ILE166B, ILE191A, ILE191B, ILE83A, ILE83B, ILE90A, ILE90B, LEU159A, LEU159B, LEU201A, LEU201B, LEU215A, LEU215B, LEU218A, LEU218B, LEU219A, LEU219B, LEU221A, LEU221B, LEU93A, LEU93B, LYS82A, LYS82B, MET188A, MET188B, MET192A, MET192B, MET88A, MET88B, PHE198A, PHE198B, PHE210A, PHE210B, SER195A, SER195B, SER211A, SER211B, SER84A, SER84B, THR193A, THR193B, THR204A, THR204B, THR209A, THR209B, THR87A, THR87B, VAL101A, VAL101B, VAL186A, VAL186B, VAL190A, VAL190B, VAL199A, VAL199B
• A-C: GLY81A, GLY81C, LYS80C, LYS82A, SER78C, SER79C
• A-E: GLY81A, LYS80A, LYS80E, LYS82E, SER78A, SER79A
• A-F: ALA121A, ALA121F, ALA41A, ALA41F, ALA61A, ALA61F, ALA69A, ALA69F, ARG46A, ARG46F, ARG68A, ARG68F, ARG73A, ARG73F, ARG76A, ARG76F, ASN34A, ASN34F, ASN40A, ASN40F, ASN71A, ASN71F, ASP115A, ASP115F, ASP117A, ASP117F, ASP122A, ASP122F, ASP19A, ASP19F, ASP45A, ASP45F, CYS116A, CYS116F, CYS39A, GLN120A, GLN120F, GLN72A, GLN72F, GLN91A, GLN91F, GLU25A, GLU25F, GLU44A, GLU44F, GLU62A, GLU62F, GLU77A, GLU77F, GLY123A, GLY123F, GLY26A, GLY26F, GLY81A, GLY81F, HIS23A, HIS23F, ILE112A, ILE112F, ILE114A, ILE114F, ILE119A, ILE119F, ILE21A, ILE21F, ILE38A, ILE38F, ILE75A, ILE75F, ILE83A, ILE83F, LEU29A, LEU29F, LEU66A, LEU66F, LYS36A, LYS36F, LYS80A, LYS80F, LYS82A, LYS82F, MET65A, MET65F, PHE20A, PHE20F, PRO24A, PRO24F, PRO67A, PRO67F, SER22A, SER22F, SER27A, SER27F, SER42A, SER42F, SER64A, SER64F, SER78A, SER78F, SER79A, SER79F, SER84A, SER84F, THR111A, THR111F, THR35A, THR35F, THR60A, THR60F, THR70A, THR70F, THR74A, THR74F, THR87A, THR87F, TRP113A, TRP113F, TYR178A, TYR178F, TYR63A, TYR63F, VAL118A, VAL118F, VAL43A, VAL43F
• B-C: ALA121B, ALA121C, ALA41B, ALA41C, ALA61B, ALA61C, ALA69B, ALA69C, ARG46B, ARG46C, ARG68B, ARG68C, ARG73B, ARG73C, ARG76B, ARG76C, ASN34B, ASN34C, ASN40B, ASN40C, ASN71B, ASN71C, ASP115B, ASP115C, ASP117B, ASP117C, ASP122B, ASP122C, ASP19B, ASP19C, ASP45B, ASP45C, CYS116B, CYS116C, CYS39C, GLN120B, GLN120C, GLN72B, GLN72C, GLN91B, GLN91C, GLU25B, GLU25C, GLU44B, GLU44C, GLU62B, GLU62C, GLU77B, GLU77C, GLY123B, GLY123C, GLY26B, GLY26C, GLY81B, GLY81C, HIS23B, HIS23C, ILE112B, ILE112C, ILE114B, ILE114C, ILE119B, ILE119C, ILE21B, ILE21C, ILE38B, ILE38C, ILE75B, ILE75C, ILE83B, ILE83C, LEU29B, LEU29C, LEU66B, LEU66C, LYS36B, LYS36C, LYS80B, LYS80C, LYS82B, LYS82C, MET65B, MET65C, PHE20B, PHE20C, PRO24B, PRO24C, PRO67B, PRO67C, SER22B, SER22C, SER27B, SER27C, SER42B, SER42C, SER64B, SER64C, SER78B, SER78C, SER79B, SER79C, SER84B, SER84C, THR111B, THR111C, THR35B, THR35C, THR60B, THR60C, THR70B, THR70C, THR74B, THR74C, THR87B, THR87C, TRP113B, TRP113C, TYR178B, TYR178C, TYR63B, TYR63C, VAL118B, VAL118C, VAL43B, VAL43C
• B-D: GLY81B, GLY81D, LYS80B, LYS80D, LYS82D, SER78B, SER79B
• B-F: GLY81B, GLY81F, LYS80F, LYS82B, SER78F, SER79F
• C-D: ALA100C, ALA100D, ALA208C, ALA208D, ALA222C, ALA222D, ALA97C, ALA97D, ARG126C, ARG126D, ARG197C, ARG197D, ARG212C, ARG212D, ARG86C, ARG86D, ARG92C, ARG92D, ARG96C, ARG96D, ARG99C, ARG99D, ASN189C, ASN189D, ASN216C, ASN216D, ASP157C, ASP157D, ASP187C, ASP187D, ASP214C, ASP214D, GLN202C, GLN202D, GLN91C, GLN91D, GLU185C, GLU200C, GLU200D, GLU206C, GLU206D, GLU207C, GLU207D, GLU213C, GLU213D, GLU223C, GLU223D, GLU89C, GLU89D, GLY196C, GLY196D, GLY203C, GLY203D, GLY205C, GLY205D, GLY217C, GLY217D, GLY220C, GLY220D, GLY81C, GLY81D, GLY85C, GLY85D, ILE166C, ILE166D, ILE191C, ILE191D, ILE83C, ILE83D, ILE90C, ILE90D, LEU159C, LEU159D, LEU201C, LEU201D, LEU215C, LEU215D, LEU218C, LEU218D, LEU219C, LEU219D, LEU221C, LEU221D, LEU93C, LEU93D, LYS224C, LYS82C, LYS82D, MET188C, MET188D, MET192C, MET192D, MET88C, MET88D, PHE198C, PHE198D, PHE210C, PHE210D, SER195C, SER195D, SER211C, SER211D, SER84C, SER84D, THR156D, THR193C, THR193D, THR204C, THR204D, THR209C, THR209D, THR87C, THR87D, TRP58C, TRP58D, VAL101C, VAL101D, VAL102D, VAL186C, VAL186D, VAL190C, VAL190D, VAL199C, VAL199D
• C-E: GLY81C, GLY81E, LYS80C, LYS80E, LYS82C, SER78E, SER79E
• D-E: ALA121D, ALA121E, ALA41D, ALA41E, ALA61D, ALA61E, ALA69D, ALA69E, ARG12D, ARG46E, ARG68D, ARG68E, ARG73D, ARG73E, ARG76D, ARG76E, ASN177D, ASN34D, ASN34E, ASN40D, ASN40E, ASN71D, ASN71E, ASP115D, ASP115E, ASP117D, ASP117E, ASP122D, ASP122E, ASP17D, ASP17E, ASP19D, ASP19E, CYS116D, CYS116E, CYS39D, GLN120D, GLN120E, GLN72D, GLN72E, GLN91D, GLN91E, GLU179E, GLU25D, GLU25E, GLU44D, GLU44E, GLU62D, GLU62E, GLU77D, GLU77E, GLY123D, GLY123E, GLY26D, GLY33D, GLY33E, GLY81D, GLY81E, HIS23D, HIS23E, ILE112E, ILE114D, ILE114E, ILE119D, ILE119E, ILE21D, ILE21E, ILE38D, ILE38E, ILE75D, ILE75E, ILE83D, ILE83E, LEU29D, LEU29E, LEU66D, LEU66E, LYS36D, LYS36E, LYS80D, LYS80E, LYS82D, LYS82E, MET65D, MET65E, PHE20D, PHE20E, PRO24D, PRO24E, PRO67D, PRO67E, SER22D, SER22E, SER27D, SER27E, SER42D, SER42E, SER64D, SER64E, SER78D, SER78E, SER79D, SER79E, SER84D, SER84E, THR111D, THR111E, THR31D, THR35D, THR35E, THR60D, THR60E, THR70D, THR70E, THR74D, THR74E, THR87D, THR87E, TRP113D, TRP113E, TYR178D, TYR178E, TYR63D, TYR63E, VAL118D, VAL118E, VAL43D, VAL43E
• D-F: GLY81D, GLY81F, LYS80D, LYS80F, LYS82F, SER78D, SER79D
• E-F: ALA100E, ALA100F, ALA208E, ALA208F, ALA222E, ALA222F, ALA97E, ALA97F, ARG126E, ARG126F, ARG197E, ARG197F, ARG212E, ARG212F, ARG86E, ARG86F, ARG92E, ARG92F, ARG96E, ARG96F, ARG99E, ARG99F, ASN189E, ASN189F, ASN216E, ASN216F, ASP157F, ASP187E, ASP187F, ASP214E, ASP214F, GLN202E, GLN202F, GLU185E, GLU200E, GLU200F, GLU206E, GLU206F, GLU207E, GLU207F, GLU213E, GLU213F, GLU223E, GLU223F, GLU89E, GLU89F, GLY196E, GLY196F, GLY203E, GLY203F, GLY205E, GLY205F, GLY217E, GLY217F, GLY220E, GLY220F, GLY81E, GLY81F, GLY85E, GLY85F, GLY95F, ILE166E, ILE191E, ILE191F, ILE83E, ILE83F, ILE90E, ILE90F, LEU104F, LEU159E, LEU159F, LEU201E, LEU201F, LEU215E, LEU215F, LEU218E, LEU218F, LEU219E, LEU219F, LEU221E, LEU221F, LEU93E, LEU93F, LYS224E, LYS82E, LYS82F, MET188E, MET188F, MET192E, MET192F, MET88E, MET88F, PHE158F, PHE198E, PHE198F, PHE210E, PHE210F, SER195E, SER195F, SER211E, SER211F, SER84E, SER84F, THR156F, THR193E, THR193F, THR204E, THR204F, THR209E, THR209F, THR87E, TRP58E, TRP58F, VAL101E, VAL101F, VAL102F, VAL186E, VAL186F, VAL190E, VAL190F, VAL199E, VAL199F