1O9R

the x-ray crystal structure of agrobacterium tumefaciens dps, a member of the family that protect dna without binding

• Total interactions analyzed: 15
• Total true interactions: 10
• Strongest Interaction:
  • Chains: C-E
  • Int. Res.: 74
  • Norm. En. per Res.: -5.0799
• Hub Node: A(5)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-32.071	-50.3124	-371.767	-454.1504	142	24	4	15930	2	34	38
A-C	-58.6494	-94.7575	-201.568	-354.9749	76	11	0	7822	6	38	44
A-D	-39.463	3.5238	-173.118	-209.0571	52	7	8	6229	0	14	19
A-E	-43.4257	-107.5269	-203.277	-354.2297	76	9	0	7826	6	39	45
A-F	-31.3834	-2.2264	-186.333	-219.9428	54	5	6	6408	0	15	19
B-C	-41.05	-16.6483	-174.732	-232.4302	52	13	7	6282	2	16	19
B-D	-50.5158	-97.1186	-204.707	-352.3414	77	6	0	7931	7	39	45
C-E	-55.0065	-109.7726	-211.134	-375.9132	74	10	0	7977	6	39	44
D-F	-30.3948	-5.857	-182.508	-218.7598	53	6	6	6448	0	15	20
E-F	-40.419	-69.9087	-380.836	-491.1637	143	22	4	15980	4	34	40

Interface residues

• A-B: ALA27A, ALA27B, ALA33A, ALA33B, ALA39A, ALA39B, ALA70A, ALA70B, ALA80A, ALA80B, ALA86A, ALA86B, ALA95A, ALA95B, ARG113A, ARG113B, ARG59A, ARG59B, ARG72A, ARG72B, ASN23A, ASN23B, ASN42A, ASN42B, ASN64A, ASN64B, ASP31A, ASP31B, ASP56A, ASP56B, ASP63A, ASP63B, ASP67A, ASP67B, ASP99A, ASP99B, GLN38A, GLN38B, GLN75A, GLN75B, GLN85A, GLN85B, GLU71A, GLU71B, GLY66A, GLY66B, GLY77A, GLY77B, GLY78A, GLY78B, GLY82A, GLY82B, HIS106A, HIS106B, HIS40A, HIS40B, HIS4A, HIS4B, HIS52A, HIS52B, HIS65A, HIS65B, ILE100A, ILE100B, ILE30A, ILE30B, ILE69A, ILE69B, LEU26A, LEU26B, LEU32A, LEU32B, LEU34A, LEU34B, LEU43A, LEU43B, LEU62A, LEU62B, LEU81A, LEU81B, LEU84A, LEU84B, LEU93A, LEU93B, LYS102A, LYS102B, LYS2A, LYS2B, LYS37A, LYS37B, LYS44A, LYS44B, LYS5A, LYS5B, LYS94A, LYS94B, MET1A, MET1B, PHE48A, PHE48B, PRO97A, PRO97B, SER28A, SER28B, SER83A, SER83B, SER88A, SER88B, SER89A, SER89B, THR36A, THR36B, THR3A, THR3B, THR60A, THR60B, THR68A, THR68B, THR6A, THR6B, THR79A, THR79B, THR90A, THR90B, THR91A, THR91B, THR98A, THR98B, TRP41A, TRP41B, TYR101A, TYR101B, TYR96A, TYR96B, VAL35A, VAL35B, VAL73A, VAL73B, VAL74A, VAL74B, VAL87A, VAL87B
• A-C: ALA118C, ALA137A, ALA137C, ALA142A, ALA142C, ALA143A, ALA143C, ALA156C, ALA70A, ALA80A, ARG113C, ARG122C, ARG145C, ARG72A, ASN119C, ASN64A, ASN8A, ASP108C, ASP126C, ASP129A, ASP129C, ASP133A, ASP138A, ASP138C, ASP146C, ASP148C, ASP67A, ASP9A, GLN159C, GLN75A, GLU112C, GLU116C, GLU155C, GLU160C, GLU71A, GLY115C, GLY132A, GLY77A, GLY78A, HIS4A, HIS65A, ILE111C, ILE121C, ILE125C, ILE139A, ILE69A, LEU10A, LEU110C, LEU147C, LEU151C, LEU76A, LYS123C, LYS149C, LYS15A, LYS2A, LYS5A, LYS7A, MET120C, PHE140A, PHE140C, PHE153C, PRO11A, PRO134A, SER144C, SER150C, THR135A, THR136A, THR141A, THR141C, THR3A, THR68A, THR6A, TRP152C, TYR114C, VAL158C, VAL74A
• A-D: ALA156D, ALA39A, ALA50A, ALA50D, ASN42A, ASP105A, ASP56A, GLN159D, GLN47A, GLN47D, GLU155D, GLU160D, GLU53A, GLU53D, GLY45A, HIS104A, HIS104D, HIS106A, HIS157D, HIS40A, HIS52A, HIS52D, ILE100A, ILE103A, ILE103D, ILE49A, ILE49D, LEU107A, LEU107D, LEU154D, LEU43A, LEU54D, LEU55D, LYS102A, LYS149D, LYS161D, LYS44A, PHE153D, PHE48A, PHE58D, PRO46A, PRO46D, SER150D, SER162A, SER162D, THR57D, TRP152D, TRP41A, TYR101A, VAL158D, VAL51A, VAL51D
• A-E: ALA118A, ALA137A, ALA137E, ALA142A, ALA142E, ALA143A, ALA143E, ALA156A, ALA70E, ALA80E, ARG113A, ARG122A, ARG145A, ARG72E, ASN119A, ASN64E, ASN8E, ASP108A, ASP126A, ASP129A, ASP129E, ASP133E, ASP138A, ASP138E, ASP146A, ASP148A, ASP67E, ASP9E, GLN159A, GLN75E, GLU112A, GLU116A, GLU155A, GLU160A, GLU71E, GLY115A, GLY132E, GLY77E, HIS4E, HIS65E, ILE111A, ILE121A, ILE125A, ILE139E, ILE69E, LEU10E, LEU110A, LEU147A, LEU151A, LEU76E, LYS123A, LYS149A, LYS15E, LYS161A, LYS2E, LYS5E, LYS7E, MET120A, PHE140A, PHE140E, PHE153A, PRO11E, PRO134E, SER144A, SER150A, THR135E, THR136E, THR141A, THR141E, THR3E, THR68E, THR6E, TRP152A, TYR114A, VAL158A, VAL74E
• A-F: ALA156A, ALA39F, ALA50A, ALA50F, ASN42F, ASP105F, ASP56F, GLN159A, GLN47A, GLN47F, GLU155A, GLU160A, GLU53A, GLU53F, GLY45F, HIS104A, HIS104F, HIS106F, HIS157A, HIS40F, HIS52A, HIS52F, ILE100F, ILE103A, ILE103F, ILE49A, ILE49F, LEU107A, LEU107F, LEU154A, LEU43F, LEU54A, LEU55A, LYS102F, LYS149A, LYS161A, LYS44F, PHE153A, PHE48A, PHE48F, PHE58A, PRO46A, PRO46F, SER150A, SER162A, SER162F, THR57A, TRP152A, TRP41F, TYR101F, VAL158A, VAL158F, VAL51A, VAL51F
• B-C: ALA156C, ALA39B, ALA50B, ALA50C, ASN42B, ASP105B, ASP56B, GLN159C, GLN47B, GLN47C, GLU155C, GLU160C, GLU53B, GLU53C, GLY45B, HIS104B, HIS104C, HIS106B, HIS157C, HIS40B, HIS52B, HIS52C, ILE100B, ILE103B, ILE103C, ILE49B, ILE49C, LEU107B, LEU107C, LEU154C, LEU43B, LEU54C, LEU55C, LYS102B, LYS149C, LYS161C, LYS44B, PHE153C, PHE48B, PHE58C, PRO46B, PRO46C, SER150C, SER162B, SER162C, THR57C, TRP152C, TRP41B, TYR101B, VAL158C, VAL51B, VAL51C
• B-D: ALA118D, ALA137B, ALA137D, ALA142B, ALA142D, ALA143B, ALA143D, ALA156D, ALA70B, ALA80B, ARG113D, ARG122D, ARG145D, ARG72B, ASN119D, ASN64B, ASN8B, ASP108D, ASP126D, ASP129B, ASP129D, ASP133B, ASP138B, ASP138D, ASP146D, ASP148D, ASP67B, ASP9B, GLN159D, GLN75B, GLU112D, GLU116D, GLU155D, GLU160D, GLU71B, GLY115D, GLY132B, GLY77B, GLY78B, HIS4B, HIS65B, ILE111D, ILE121D, ILE125D, ILE139B, ILE69B, LEU10B, LEU110D, LEU147D, LEU151D, LEU76B, LYS123D, LYS149D, LYS15B, LYS161D, LYS2B, LYS5B, LYS7B, MET120D, PHE140B, PHE140D, PHE153D, PRO11B, PRO134B, SER144D, SER150D, THR135B, THR136B, THR141B, THR141D, THR3B, THR68B, THR6B, TRP152D, TYR114D, VAL158D, VAL74B
• C-E: ALA118E, ALA137C, ALA137E, ALA142C, ALA142E, ALA143C, ALA143E, ALA14C, ALA156E, ALA70C, ARG113E, ARG122E, ARG145E, ARG72C, ASN119E, ASN64C, ASN8C, ASP108E, ASP126E, ASP129C, ASP129E, ASP133C, ASP138C, ASP138E, ASP146E, ASP148E, ASP67C, ASP9C, GLN159E, GLN75C, GLU112E, GLU116E, GLU155E, GLU160E, GLU71C, GLY115E, GLY132C, GLY77C, HIS4C, HIS65C, ILE111E, ILE121E, ILE125E, ILE139C, ILE69C, LEU10C, LEU110E, LEU147E, LEU151E, LEU76C, LYS123E, LYS149E, LYS15C, LYS161E, LYS5C, LYS7C, MET120E, PHE140C, PHE140E, PHE153E, PRO11C, PRO134C, SER144E, SER150E, THR135C, THR136C, THR141C, THR141E, THR68C, THR6C, TRP152E, TYR114E, VAL158E, VAL74C
• D-F: ALA156F, ALA39D, ALA50D, ALA50F, ASN42D, ASP105D, ASP56D, GLN159F, GLN47D, GLN47F, GLU155F, GLU160F, GLU53D, GLU53F, GLY45D, HIS104D, HIS104F, HIS106D, HIS157D, HIS157F, HIS40D, HIS52D, HIS52F, ILE100D, ILE103D, ILE103F, ILE49D, ILE49F, LEU107D, LEU107F, LEU154F, LEU43D, LEU54F, LEU55F, LYS102D, LYS149F, LYS161F, LYS44D, PHE153F, PHE48D, PHE58F, PRO46D, PRO46F, SER150F, SER162D, SER162F, THR57F, TRP152F, TRP41D, TYR101D, VAL158F, VAL51D, VAL51F
• E-F: ALA27E, ALA27F, ALA33E, ALA33F, ALA39E, ALA39F, ALA70E, ALA70F, ALA80E, ALA80F, ALA86E, ALA86F, ALA95E, ALA95F, ARG113E, ARG113F, ARG59E, ARG59F, ARG72E, ARG72F, ASN23E, ASN23F, ASN42E, ASN42F, ASN64E, ASN64F, ASP105F, ASP31E, ASP31F, ASP56E, ASP56F, ASP63E, ASP63F, ASP67E, ASP67F, ASP99E, ASP99F, GLN38E, GLN38F, GLN75E, GLN75F, GLN85E, GLN85F, GLU71E, GLU71F, GLY66E, GLY66F, GLY77E, GLY77F, GLY78E, GLY78F, GLY82E, GLY82F, HIS106E, HIS106F, HIS40E, HIS40F, HIS4E, HIS4F, HIS52E, HIS52F, HIS65E, HIS65F, ILE100E, ILE100F, ILE30E, ILE30F, ILE69E, ILE69F, LEU26E, LEU26F, LEU32E, LEU32F, LEU34E, LEU34F, LEU43E, LEU43F, LEU62E, LEU62F, LEU81E, LEU81F, LEU84E, LEU84F, LEU93E, LEU93F, LYS102E, LYS102F, LYS2E, LYS2F, LYS37E, LYS37F, LYS44E, LYS44F, LYS5E, LYS5F, LYS94E, LYS94F, MET1E, MET1F, PHE48E, PHE48F, PRO97E, PRO97F, SER28E, SER28F, SER83E, SER83F, SER88E, SER88F, SER89E, SER89F, THR36E, THR36F, THR3E, THR3F, THR60E, THR60F, THR68E, THR68F, THR79E, THR79F, THR90E, THR90F, THR91E, THR91F, THR98E, THR98F, TRP41E, TRP41F, TYR101E, TYR101F, TYR96E, TYR96F, VAL29E, VAL29F, VAL35E, VAL35F, VAL73E, VAL73F, VAL74E, VAL74F, VAL87E, VAL87F