1NO4

crystal structure of the pre-assembly scaffolding protein gp7 from the double-stranded dna bacteriophage phi29

• Total interactions analyzed: 6
• Total true interactions: 6
• Strongest Interaction:
  • Chains: B-D
  • Int. Res.: 35
  • Norm. En. per Res.: -5.4574
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-55.5481	-104.951	-532.215	-692.7141	147	35	24	21195	8	38	44
A-C	0.0	-24.4251	-16.0886	-40.5138	22	0	0	855	0	11	5
A-D	0.0	7.7519	-55.971	-48.2191	29	0	2	2608	0	6	9
B-C	0.0	0.0	-0.0193	-0.0193	5	0	0	20	0	0	0
B-D	-15.8749	-64.8504	-110.284	-191.0093	35	3	1	3818	3	12	10
C-D	-53.706	-96.4956	-521.29	-671.4916	144	26	24	20747	7	38	45

Interface residues

• A-B: ALA21A, ALA21B, ALA28A, ALA28B, ALA54A, ALA54B, ALA55A, ALA55B, ARG25A, ARG25B, ARG33A, ARG33B, ARG69A, ARG69B, ASN13A, ASN13B, ASN35A, ASN35B, ASN44A, ASN44B, ASN64A, ASN64B, ASP10A, ASP17A, ASP17B, ASP45A, ASP45B, ASP58A, ASP58B, ASP59A, ASP59B, GLN22A, GLN22B, GLN30A, GLN30B, GLN31A, GLN31B, GLN70A, GLN70B, GLU19A, GLU19B, GLU24A, GLU27A, GLU27B, GLU42A, GLU42B, GLU51A, GLU51B, GLU56A, GLU56B, GLU6A, GLU6B, GLU75A, GLU75B, GLU78A, GLU7A, GLU7B, GLU9A, GLU9B, GLY37A, GLY37B, GLY72A, GLY72B, HIS50A, HIS50B, HIS8A, HIS8B, ILE11A, ILE11B, ILE61A, ILE61B, ILE71A, ILE71B, LEU12A, LEU12B, LEU15A, LEU15B, LEU16A, LEU16B, LEU20A, LEU20B, LEU29A, LEU29B, LEU32A, LEU32B, LEU3A, LEU3B, LEU46A, LEU46B, LEU53A, LEU53B, LEU60A, LEU60B, LEU67A, LEU67B, LEU73B, LYS14A, LYS14B, LYS48A, LYS48B, LYS4A, LYS4B, LYS52A, LYS52B, LYS57A, LYS57B, LYS66A, LYS66B, LYS76B, PHE39A, PHE39B, PHE68A, PHE68B, PRO18A, PRO18B, PRO2A, PRO2B, PRO5A, PRO5B, SER23A, SER23B, SER38A, SER38B, SER41A, SER41B, SER49A, SER49B, SER63A, SER63B, SER65A, SER65B, THR26A, THR26B, THR47A, THR47B, THR74A, THR74B, TYR36A, TYR36B, TYR43A, TYR43B, VAL34A, VAL34B, VAL40A, VAL40B, VAL62A, VAL62B
• A-C: ALA55C, ARG69A, ASN64A, ASP59C, GLU56C, GLU75A, GLY72A, ILE61A, ILE71A, LEU53C, LEU60C, LEU67C, LEU73A, LYS52C, LYS57C, LYS66A, LYS66C, LYS76A, PHE68A, SER63C, SER65A, VAL62A
• A-D: ALA54D, ALA55D, ARG69A, ARG69D, ASN64A, ASN64D, ASP58A, ASP58D, ASP59D, GLU75A, ILE61A, ILE61D, ILE71A, LEU60A, LEU60D, LEU67A, LEU67D, LYS57A, LYS57D, LYS66A, LYS66D, PHE68A, PHE68D, SER63A, SER63D, SER65A, SER65D, VAL62A, VAL62D
• B-C: GLN70C, LEU67B, LEU67C, LYS66B, SER63B
• B-D: ALA55B, ARG69B, ARG69D, ASN64B, ASN64D, ASP58B, ASP58D, ASP59B, ASP59D, GLN70B, GLN70D, GLU56B, GLY72D, ILE61B, ILE61D, ILE71B, ILE71D, LEU53B, LEU60B, LEU60D, LEU67B, LEU67D, LEU73D, LYS52B, LYS57B, LYS66B, LYS66D, PHE68B, PHE68D, SER63B, SER63D, SER65B, SER65D, VAL62B, VAL62D
• C-D: ALA21C, ALA21D, ALA28C, ALA28D, ALA54C, ALA54D, ALA55C, ALA55D, ARG25C, ARG25D, ARG33C, ARG33D, ARG69C, ARG69D, ASN13C, ASN13D, ASN35C, ASN35D, ASN44C, ASN44D, ASN64C, ASN64D, ASP10D, ASP17C, ASP17D, ASP45C, ASP45D, ASP58C, ASP58D, ASP59C, ASP59D, GLN22C, GLN22D, GLN30C, GLN30D, GLN31C, GLN31D, GLN70C, GLN70D, GLU19C, GLU19D, GLU24D, GLU27C, GLU27D, GLU42C, GLU42D, GLU51C, GLU51D, GLU56C, GLU56D, GLU6C, GLU6D, GLU7C, GLU7D, GLU9C, GLU9D, GLY37C, GLY37D, GLY72C, GLY72D, HIS50C, HIS50D, HIS8C, HIS8D, ILE11C, ILE11D, ILE61C, ILE61D, ILE71C, ILE71D, LEU12C, LEU12D, LEU15C, LEU15D, LEU16C, LEU16D, LEU20C, LEU20D, LEU29C, LEU29D, LEU32C, LEU32D, LEU3C, LEU3D, LEU46C, LEU46D, LEU53C, LEU53D, LEU60C, LEU60D, LEU67C, LEU67D, LEU73C, LEU73D, LYS14C, LYS14D, LYS48C, LYS48D, LYS4C, LYS4D, LYS52C, LYS52D, LYS57C, LYS57D, LYS66C, LYS66D, PHE39C, PHE39D, PHE68C, PHE68D, PRO18C, PRO18D, PRO2C, PRO2D, PRO5C, PRO5D, SER23C, SER23D, SER38C, SER38D, SER41C, SER41D, SER49C, SER49D, SER63C, SER63D, SER65C, SER65D, THR26C, THR26D, THR47C, THR47D, THR74C, THR74D, TYR36C, TYR36D, TYR43C, TYR43D, VAL34C, VAL34D, VAL40C, VAL40D, VAL62C, VAL62D