1NH2

crystal structure of a yeast tfiia/tbp/dna complex

• Total interactions analyzed: 15
• Total true interactions: 5
• Strongest Interaction:
  • Chains: C-D
  • Int. Res.: 117
  • Norm. En. per Res.: -6.277
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-C	-59.8777	-10.1717	-151.468	-221.5174	48	9	4	5493	1	12	13
A-D	-36.7871	-20.08	-113.381	-170.2481	49	5	1	3915	1	10	11
B-C	-8.4532	0.0	-39.8534	-48.3066	20	4	1	1622	0	5	4
B-D	-19.6879	-57.0811	-284.887	-361.6561	96	6	15	12748	2	26	29
C-D	-171.3836	-23.7541	-539.27	-734.4077	117	26	20	20854	0	35	24

Interface residues

• A-C: ALA256C, ALA86A, ALA89A, ALA92A, ARG105A, ARG107A, ARG141A, ARG253C, ARG90A, ARG98A, ASN91A, ASN95A, ASP228C, ASP249C, GLN144A, GLU108A, GLU284C, GLU93A, GLY147A, HIS88A, ILE103A, ILE106A, ILE142A, ILE143A, ILE146A, ILE231C, LEU230C, LEU87A, LYS110A, LYS127A, LYS138A, LYS145A, LYS250C, LYS255C, MET104A, PRO109A, THR111A, THR112A, THR252C, THR84A, TRP258C, TRP285C, TYR139A, TYR229C, TYR248C, VAL251C, VAL286C, VAL85A
• A-D: ALA113A, ALA86A, ALA89A, ALA92A, ARG105A, ARG107A, ARG112D, ARG90A, ARG98A, ASN117D, ASN65D, ASN91A, ASN95A, ASP67D, ASP73D, ASP74D, CYS72D, GLU93A, GLY70D, HIS88A, ILE103A, ILE106A, ILE79D, LEU66D, LEU82A, LEU87A, LYS110D, LYS119D, LYS81D, LYS83A, LYS97A, MET104A, PHE71D, PHE78D, PRO96A, SER121D, THR111A, THR112A, THR68D, THR77D, THR84A, TRP76D, TYR139A, TYR69D, TYR94A, VAL102A, VAL75D, VAL80D, VAL85A
• B-C: ALA4B, ALA6B, ARG8B, ASN272C, ASN3B, ASP273C, GLN277C, GLU5B, GLY265C, ILE13B, LEU46B, PHE276C, SER7B, THR268C, THR275C, TYR10B, TYR274C, VAL266C, VAL267C, VAL9B
• B-D: ALA22D, ALA28B, ALA37D, ALA49D, ALA6B, ARG22B, ARG31D, ARG39D, ARG8B, ASN17D, ASN19B, ASN27B, ASN3B, ASN40B, ASN55D, ASP21D, ASP24B, ASP24D, ASP29D, ASP31B, ASP37B, ASP45D, ASP54D, ASP89D, GLN33B, GLN36B, GLN43B, GLN57D, GLU11B, GLU15B, GLU20B, GLU23B, GLU26B, GLU32B, GLU33D, GLU42D, GLU48B, GLU50D, GLU5B, GLU88D, GLY16D, GLY29B, GLY30D, ILE106D, ILE12B, ILE13B, ILE15D, ILE27D, ILE30B, ILE32D, ILE41B, LEU19D, LEU23D, LEU26D, LEU35B, LEU36D, LEU38B, LEU41D, LEU46B, LEU52D, LEU60D, LYS39B, LYS44B, LYS45B, LYS46D, LYS53D, LYS59D, PHE25B, PHE44D, SER104D, SER13D, SER16B, SER18D, SER35D, SER58D, SER7B, THR14D, THR25D, THR34B, THR43D, THR47B, THR51D, THR56D, TRP42B, TYR10B, TYR10D, VAL14B, VAL17B, VAL18B, VAL20D, VAL21B, VAL40D, VAL47D, VAL48D, VAL87D, VAL9B
• C-D: ALA115D, ALA256C, ALA279C, ALA283C, ALA49D, ARG112D, ARG11D, ARG12D, ARG253C, ARG257C, ARG271C, ASN117D, ASN17D, ASN242C, ASN270C, ASN272C, ASN55D, ASN65D, ASP109D, ASP228C, ASP249C, ASP264C, ASP273C, ASP54D, ASP67D, ASP73D, ASP74D, CYS116D, CYS246C, CYS260C, CYS72D, CYS83D, GLN277C, GLN280C, GLN57D, GLN84D, GLU241C, GLU282C, GLU284C, GLU50D, GLU88D, GLU8D, GLY16D, GLY265C, GLY64D, GLY70D, ILE106D, ILE113D, ILE15D, ILE231C, ILE269C, ILE79D, LEU111D, LEU230C, LEU243C, LEU245C, LEU247C, LEU262C, LEU52D, LEU60D, LEU66D, LEU9D, LYS110D, LYS119D, LYS120D, LYS250C, LYS259C, LYS263C, LYS278C, LYS53D, LYS59D, LYS63D, LYS81D, MET244C, PHE276C, PHE44D, PHE71D, PHE78D, SER104D, SER107D, SER118D, SER13D, SER261C, SER58D, THR14D, THR252C, THR268C, THR275C, THR51D, THR56D, THR61D, THR68D, THR77D, THR86D, TRP258C, TRP285C, TRP76D, TYR10D, TYR229C, TYR248C, TYR274C, TYR69D, TYR6D, TYR7D, VAL108D, VAL114D, VAL251C, VAL266C, VAL267C, VAL281C, VAL286C, VAL48D, VAL62D, VAL75D, VAL80D, VAL85D, VAL87D