1NEK

complex ii (succinate dehydrogenase) from e. coli with ubiquinone bound

• Total interactions analyzed: 6
• Total true interactions: 5
• Strongest Interaction:
  • Chains: A-B
  • Int. Res.: 229
  • Norm. En. per Res.: -3.4478
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-96.1503	-44.4434	-648.957	-789.5507	229	53	6	27209	12	98	101
A-C	0.0	-19.0914	-4.974	-24.0654	7	0	0	233	1	5	0
B-C	-62.0371	-49.5295	-265.086	-376.6526	117	32	3	12327	2	28	20
B-D	-26.3361	-23.8172	-123.706	-173.8592	61	13	6	5394	1	12	11
C-D	-5.8177	-42.7077	-245.717	-294.2424	127	11	14	10592	3	4	12

Interface residues

• A-B: ALA112B, ALA130B, ALA136A, ALA137A, ALA138A, ALA144A, ALA153B, ALA177B, ALA215A, ALA247A, ALA249A, ALA49A, ALA56A, ARG101B, ARG108A, ARG117A, ARG131B, ARG140A, ARG140B, ARG180B, ARG186B, ARG193B, ARG207A, ARG31B, ARG326A, ARG43A, ARG460A, ARG498A, ARG510A, ARG52B, ARG53B, ARG56B, ARG9B, ASN11B, ASN123B, ASN153A, ASN156A, ASN214A, ASN218A, ASN507A, ASN59A, ASP102B, ASP106B, ASP110A, ASP111A, ASP139A, ASP13B, ASP144B, ASP184B, ASP187B, ASP32B, ASP37B, ASP455A, ASP46B, ASP500A, ASP501A, ASP63A, ASP63B, CYS149B, CYS152B, CYS513A, CYS55B, CYS60B, CYS75B, GLN116A, GLN122A, GLN135B, GLN139B, GLN151A, GLN152A, GLN210A, GLN41B, GLN509A, GLN50A, GLU100A, GLU115B, GLU132B, GLU138B, GLU141B, GLU148B, GLU163A, GLU186A, GLU332A, GLU44B, GLU505A, GLU512A, GLU515A, GLU57B, GLU62A, GLU94A, GLU98A, GLY103A, GLY108B, GLY112A, GLY120A, GLY121A, GLY142A, GLY145B, GLY248A, GLY250A, GLY305A, GLY308A, GLY329A, GLY58A, GLY58B, GLY61B, GLY64B, GLY92A, HIS101A, HIS133B, HIS143A, HIS147A, HIS157A, HIS216A, HIS339A, HIS45A, ILE100B, ILE117B, ILE150B, ILE185A, ILE217A, ILE246A, ILE40B, ILE76B, ILE96A, LEU103B, LEU104A, LEU109A, LEU121B, LEU122B, LEU134B, LEU143B, LEU145A, LEU146A, LEU146B, LEU151B, LEU154A, LEU220B, LEU252A, LEU333A, LEU36B, LEU499A, LEU49B, LEU57A, LEU73B, LEU94B, LEU97A, LEU99A, LYS116B, LYS118B, LYS155A, LYS218B, LYS38A, LYS43B, LYS45B, LYS461A, MET102A, MET107B, MET136B, MET34B, PHE106A, PHE110B, PHE119A, PHE181B, PHE337A, PHE40A, PHE506A, PHE51B, PRO105A, PRO118A, PRO119B, PRO128B, PRO129B, PRO12B, PRO137B, PRO217B, PRO306A, PRO328A, PRO41A, PRO456A, PRO47B, PRO78B, PRO93A, SER107A, SER162A, SER185B, SER211A, SER325A, SER44A, SER48A, SER48B, SER503A, SER504A, SER50B, SER54B, SER62B, SER80B, THR141A, THR148A, THR187A, THR212A, THR213A, THR219A, THR336A, THR352A, THR42A, THR46A, THR502A, THR508A, THR77B, TRP307A, TYR10B, TYR111B, TYR114B, TYR120B, TYR147B, TYR150A, VAL104B, VAL105B, VAL14B, VAL251A, VAL253A, VAL39A, VAL457A, VAL47A, VAL511A, VAL55A, VAL59B, VAL99B
• A-C: ARG9C, GLU186A, GLU505A, LYS7C, PHE506A, SER504A, THR187A
• B-C: ALA105C, ALA17B, ALA225B, ALA24C, ALA26C, ALA81B, ARG101B, ARG108C, ARG19C, ARG205B, ARG224B, ARG31C, ARG52B, ARG90C, ARG92B, ARG9B, ARG9C, ASN11B, ASN12C, ASN165B, ASN211B, ASN221B, ASN66B, ASN68B, ASN71B, ASP102B, ASP106B, ASP13B, ASP14C, ASP15B, ASP16B, ASP95C, CYS159B, CYS206B, CYS212B, GLN109B, GLN16C, GLN8C, GLU100C, GLU101C, GLU104C, GLY106C, GLY108B, GLY227B, GLY69B, GLY96B, HIS207B, HIS228B, HIS30C, HIS91C, ILE100B, ILE18C, ILE209B, ILE226B, ILE22C, ILE25C, ILE28C, ILE91B, LEU103B, LEU13C, LEU15C, LEU220B, LEU234B, LEU65B, LEU82B, LEU94B, LEU97B, LYS107C, LYS230B, LYS6C, LYS70B, LYS7C, MET107B, MET20B, MET210B, MET67B, MET94C, PHE103C, PHE162B, PHE204B, PHE20C, PHE96C, PRO10C, PRO12B, PRO160B, PRO166B, PRO18B, PRO21C, PRO222B, PRO93B, PRO95B, PRO98B, SER109C, SER158B, SER161B, SER208B, SER214B, SER231B, SER27C, THR102C, THR157B, THR17C, THR223B, THR23C, TRP163B, TRP164B, TYR10B, TYR8B, VAL104B, VAL105B, VAL11C, VAL14B, VAL213B, VAL215B, VAL87C, VAL90B, VAL99B
• B-D: ALA200B, ALA238B, ALA7D, ARG10D, ARG205B, ARG20D, ARG236B, ARG90D, ASN11D, ASN165B, ASN237B, ASN4D, ASP15D, ASP167B, ASP195B, ASP199B, ASP82D, CYS206B, GLN235B, GLN78D, GLY12D, GLY227B, GLY75D, GLY9D, HIS14D, HIS207B, ILE17D, ILE229B, ILE74D, LEU194B, LEU197B, LEU233B, LEU234B, LEU80D, LEU87D, LYS168B, LYS230B, LYS85D, MET232B, PHE162B, PHE169B, PHE16D, PHE201B, PHE204B, PRO160B, PRO166B, SER161B, SER198B, SER202B, SER208B, SER231B, SER3D, SER6D, THR81D, TRP163B, TRP164B, TRP77D, TYR83D, VAL13D, VAL203B, VAL79D
• C-D: ALA100D, ALA124C, ALA21D, ALA23D, ALA38D, ALA40C, ALA53D, ALA61C, ALA64D, ALA72D, ALA82C, ARG20D, ARG31C, ASP82D, ASP95C, GLN78D, GLU42D, GLU46D, GLU56C, GLU59C, GLY108D, GLY114D, GLY34C, GLY41D, GLY42C, GLY49C, GLY50D, GLY57C, GLY75D, GLY88C, HIS30C, HIS71D, HIS84C, HIS91C, ILE106D, ILE17D, ILE24D, ILE28C, ILE30D, ILE31D, ILE36C, ILE43C, ILE49D, ILE68D, ILE74D, ILE89C, ILE97D, LEU101D, LEU120C, LEU123C, LEU127C, LEU26D, LEU43D, LEU44C, LEU45C, LEU47C, LEU48C, LEU52C, LEU62D, LEU65D, LEU69D, LEU78C, LEU80D, LEU81C, LEU93D, LYS58D, MET33D, MET65C, MET76D, MET92C, MET93C, MET94C, PHE109D, PHE16D, PHE36D, PHE37D, PHE38C, PHE51D, PHE52D, PHE58C, PHE96C, PRO55C, SER40D, SER51C, SER53C, SER54C, SER62C, THR22D, THR27D, THR37C, THR39D, THR44D, THR50C, THR57D, THR61D, THR81D, TRP46C, TRP48D, TRP73D, TRP77D, TYR104D, TYR107D, TYR29D, TYR45D, TYR83D, VAL102D, VAL103D, VAL105D, VAL110D, VAL111D, VAL112D, VAL115D, VAL19D, VAL25D, VAL32C, VAL34D, VAL35C, VAL39C, VAL41C, VAL47D, VAL79D, VAL84D, VAL85C, VAL86C, VAL96D, VAL98D, VAL99D