1NDG

crystal structure of fab fragment of antibody hyhel-8 complexed with its antigen lysozyme

• Total interactions analyzed: 3
• Total true interactions: 3
• Strongest Interaction:
  • Chains: B-C
  • Int. Res.: 55
  • Norm. En. per Res.: -4.6429
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-57.1347	-29.7825	255.972	169.0547	185	17	10	18538	2	17	12
A-C	-17.6871	0.0	-115.244	-132.9311	51	8	0	4292	0	1	7
B-C	-34.7911	-28.3362	-192.231	-255.3583	55	15	1	6431	4	9	6

Interface residues

• A-B: ALA130A, ALA396B, ALA425B, ALA474B, ARG211A, ARG338B, ARG45A, ASN137A, ASN138A, ASN161A, ASN210A, ASN32A, ASN343B, ASN397B, ASP165A, ASP167A, ASP170A, ASP1A, ASP399B, ASP430B, ASP481B, CYS134A, CYS214A, CYS395B, CYS428B, CYS440B, CYS88A, GLN124A, GLN37A, GLN38A, GLN477B, GLN6A, GLN89A, GLN90A, GLU123A, GLU213A, GLU306B, GLU346B, GLU405B, GLU42A, GLY100A, GLY101A, GLY128A, GLY129A, GLY158A, GLY342B, GLY349B, GLY400B, GLY404B, GLY406B, GLY429B, GLY439B, GLY467B, GLY99A, HIS34A, HIS360B, HIS41A, HIS470B, ILE117A, ILE337B, ILE351B, ILE367B, ILE369B, ILE521B, ILE55A, ILE58A, LEU125A, LEU136A, LEU160A, LEU179A, LEU181A, LEU304B, LEU345B, LEU363B, LEU424B, LEU438B, LEU441B, LEU46A, LEU476B, LEU47A, LEU482B, LEU485B, LEU4A, LYS103A, LYS169A, LYS207A, LYS339B, LYS344B, LYS39A, LYS443B, LYS49A, LYS519B, LYS520B, MET175A, MET348B, MET85A, PHE118A, PHE135A, PHE139A, PHE209A, PHE358B, PHE472B, PHE87A, PHE98A, PRO119A, PRO120A, PRO361B, PRO423B, PRO426B, PRO44A, PRO473B, PRO95A, SER116A, SER121A, SER122A, SER127A, SER131A, SER162A, SER168A, SER174A, SER176A, SER177A, SER208A, SER335B, SER362B, SER40A, SER420B, SER435B, SER43A, SER465B, SER466B, SER478B, SER486B, SER487B, SER488B, SER56A, SER91A, THR114A, THR126A, THR164A, THR172A, THR178A, THR180A, THR357B, THR392B, THR401B, THR432B, THR437B, THR471B, THR484B, THR490B, THR97A, TRP163A, TRP336B, TRP398B, TRP403B, TRP455B, TRP94A, TYR173A, TYR186A, TYR192A, TYR333B, TYR347B, TYR350B, TYR359B, TYR36A, TYR393B, TYR394B, TYR402B, TYR422B, TYR483B, TYR50A, TYR86A, TYR96A, VAL115A, VAL132A, VAL133A, VAL159A, VAL421B, VAL427B, VAL436B, VAL442B, VAL469B, VAL475B, VAL489B
• A-C: ALA51A, ALA611C, ALA690C, ALA695C, ARG614C, ARG621C, ASN31A, ASN32A, ASN619C, ASN677C, ASN693C, ASN92A, ASP618C, CYS676C, CYS694C, GLN27A, GLN53A, GLN90A, GLY616C, GLY622C, GLY66A, GLY68A, HIS34A, HIS615C, ILE29A, ILE2A, ILE678C, LEU33A, LEU617C, LYS49A, LYS613C, LYS696C, LYS697C, MET612C, PRO95A, SER28A, SER30A, SER52A, SER54A, SER67A, SER700C, SER91A, SER93A, THR689C, TRP94A, TYR50A, TYR620C, TYR623C, TYR96A, VAL692C, VAL699C
• B-C: ALA661C, ALA695C, ALA707C, ARG331B, ARG371B, ARG621C, ARG673C, ASN356B, ASN397B, ASN665C, ASN674C, ASN677C, ASN693C, ASN703C, ASP327B, ASP332B, ASP399B, ASP701C, CYS664C, CYS676C, CYS694C, GLY355B, GLY400B, GLY671C, GLY702C, GLY704C, ILE329B, ILE330B, ILE351B, ILE678C, ILE698C, LEU675C, LYS696C, LYS697C, PHE353B, PHE358B, SER328B, SER352B, SER354B, SER672C, SER700C, THR357B, THR373B, THR401B, TRP334B, TRP398B, TRP662C, TRP663C, TYR333B, TYR350B, TYR359B, TYR402B, TYR620C, VAL692C, VAL699C