1NDD

structure of nedd8

• Total interactions analyzed: 6
• Total true interactions: 6
• Strongest Interaction:
  • Chains: B-C
  • Int. Res.: 60
  • Norm. En. per Res.: -3.8805
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	0.0	0.0	-18.786	-18.786	12	0	0	909	0	2	3
A-C	-11.8361	3.1109	-61.9703	-70.6954	39	2	0	3290	0	1	12
A-D	-31.0252	-3.0819	-204.534	-238.6411	62	7	10	9319	0	10	10
B-C	-28.9261	5.5317	-209.434	-232.8284	60	3	10	9154	0	8	10
B-D	-11.8937	3.2044	-44.0685	-52.7578	37	3	0	2434	0	1	11
C-D	0.0	3.9932	-42.6303	-38.6371	34	0	2	2349	0	4	12

Interface residues

• A-B: GLU12A, GLY10A, GLY110B, LEU108B, LEU8A, LYS111B, LYS11A, LYS6A, THR107B, THR109B, THR7A, THR9A
• A-C: ALA257C, ALA272C, ALA72A, ARG242C, ARG42A, ASN251C, ASP258C, GLN249C, GLN49A, GLY10A, GLY247C, GLY47A, HIS268C, HIS68A, ILE244C, ILE44A, LEU208C, LEU271C, LEU43A, LEU69A, LEU71A, LEU8A, LYS248C, LYS254C, LYS260C, LYS48A, LYS6A, MET250C, MET50A, SER246C, SER46A, THR7A, THR9A, TYR245C, TYR259C, TYR45A, VAL270C, VAL66A, VAL70A
• A-D: ALA372D, ALA72A, ARG342D, ARG42A, ARG74A, GLN339D, GLN340D, GLN341D, GLN349D, GLN39A, GLN40A, GLN41A, GLN49A, GLU12A, GLU312D, GLU314D, GLU31A, GLU331D, GLU334D, GLU34A, GLY10A, GLY310D, GLY335D, GLY35A, HIS368D, ILE13A, ILE15A, ILE313D, ILE315D, ILE336D, ILE344D, ILE36A, ILE44A, LEU308D, LEU343D, LEU367D, LEU369D, LEU371D, LEU373D, LEU69A, LEU71A, LEU73A, LEU8A, LYS11A, LYS304D, LYS306D, LYS311D, LYS333D, LYS33A, LYS6A, PRO337D, PRO37A, THR307D, THR309D, THR7A, THR9A, VAL305D, VAL30A, VAL330D, VAL370D, VAL5A, VAL70A
• B-C: ALA172B, ALA272C, ARG142B, ARG174B, ARG242C, GLN139B, GLN140B, GLN141B, GLN149B, GLN239C, GLN240C, GLN241C, GLN249C, GLU112B, GLU131B, GLU134B, GLU212C, GLU214C, GLU231C, GLU234C, GLY110B, GLY135B, GLY175B, GLY176B, GLY210C, GLY235C, HIS268C, ILE113B, ILE136B, ILE144B, ILE213C, ILE215C, ILE236C, ILE244C, LEU108B, LEU169B, LEU171B, LEU173B, LEU208C, LEU269C, LEU271C, LEU273C, LYS106B, LYS111B, LYS133B, LYS206C, LYS211C, LYS233C, PRO137B, PRO237C, THR107B, THR109B, THR207C, THR209C, VAL105B, VAL130B, VAL170B, VAL205C, VAL230C, VAL270C
• B-D: ALA172B, ALA372D, ARG142B, ARG342D, ASN351D, ASP358D, GLN149B, GLN349D, GLY110B, GLY147B, GLY347D, HIS168B, HIS368D, ILE144B, ILE344D, LEU108B, LEU143B, LEU169B, LEU171B, LEU308D, LEU371D, LYS106B, LYS148B, LYS348D, LYS354D, LYS360D, MET150B, MET350D, SER146B, SER346D, THR107B, THR109B, TYR145B, TYR345D, TYR359D, VAL170B, VAL370D
• C-D: ARG242C, ARG342D, GLN249C, GLY210C, GLY247C, GLY310D, GLY347D, HIS268C, HIS368D, ILE244C, ILE344D, LEU208C, LEU269C, LEU308D, LEU367D, LEU369D, LYS206C, LYS211C, LYS248C, LYS306D, LYS311D, LYS348D, SER246C, SER346D, THR207C, THR209C, THR307D, THR309D, TYR245C, TYR345D, VAL266C, VAL270C, VAL366D, VAL370D