1N73

fibrin d-dimer, lamprey complexed with the peptide ligand: gly-his- arg-pro-amide

• Total interactions analyzed: 45
• Total true interactions: 12
• Strongest Interaction:
  • Chains: B-I
  • Int. Res.: 45
  • Norm. En. per Res.: -3.7202
• Hub Node: C(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-66.5419	-132.8476	289.505	90.1155	179	70	23	24366	10	63	66
A-C	-28.1672	-83.4444	469.25	357.6384	113	31	19	11926	4	21	19
B-C	-93.8719	-75.9109	310.964	141.1812	215	41	17	21920	6	49	46
B-I	-33.727	-37.3538	-96.3302	-167.411	45	13	0	3817	5	15	14
C-F	-54.6225	-48.5586	-162.664	-265.8451	95	49	0	8270	3	45	45
C-G	-16.747	-22.5069	-133.816	-173.0699	49	16	0	5048	4	22	16
C-H	0.0	0.0	-0.064	-0.064	2	0	0	17	0	2	2
D-E	-65.9222	-102.8915	359.612	190.7983	173	44	17	21412	7	54	64
D-F	-24.6884	-67.7207	468.41	376.0009	111	34	14	11860	3	20	20
E-F	-78.7667	-59.5297	266.023	127.7266	216	50	17	22148	4	44	46
E-J	-11.3563	-41.1769	-99.039	-151.5722	46	8	0	3787	3	15	14
F-H	-18.3152	-29.2058	-111.541	-159.062	49	18	0	4848	6	22	16

Interface residues

• A-B: ALA150A, ALA153A, ALA159A, ALA163B, ALA177A, ALA178A, ALA182A, ALA183B, ALA198B, ALA206B, ALA216B, ALA447B, ARG106A, ARG110A, ARG111A, ARG117A, ARG118A, ARG142A, ARG152A, ARG160A, ARG165A, ARG170B, ARG177B, ARG187B, ARG188A, ARG197B, ARG202B, ARG276B, ARG285B, ARG435B, ASN120A, ASN132A, ASN169B, ASN171A, ASN183A, ASN282B, ASN296B, ASP146A, ASP148A, ASP167A, ASP278B, ASP448B, ASP453B, CYS154A, CYS158A, CYS214B, CYS218B, GLN116A, GLN122A, GLN124A, GLN125A, GLN130A, GLN136A, GLN139A, GLN164B, GLN173A, GLN201B, GLN210B, GLN446B, GLU107A, GLU109A, GLU144A, GLU163A, GLU166B, GLU168B, GLU169A, GLU173B, GLU175A, GLU179B, GLU187A, GLU190A, GLU191A, GLU194B, GLU204B, GLU205B, GLU212B, GLU311B, GLU445B, GLY156A, GLY184B, GLY279B, GLY295B, GLY310B, GLY434B, GLY439B, GLY450B, GLY454B, HIS114A, HIS131A, HIS195B, ILE112A, ILE113A, ILE119A, ILE133A, ILE140A, ILE147A, ILE167B, ILE176B, ILE178B, ILE181A, ILE207B, ILE308B, LEU105A, LEU108A, LEU115A, LEU123A, LEU126A, LEU128A, LEU129A, LEU141A, LEU151A, LEU162A, LEU166A, LEU172A, LEU174A, LEU184A, LEU186B, LEU193B, LEU196B, LEU213B, LYS134A, LYS155A, LYS165B, LYS168A, LYS170A, LYS172B, LYS175B, LYS176A, LYS185A, LYS190B, LYS199B, LYS208B, LYS211B, LYS444B, MET189B, MET200B, MET203B, PHE186A, PHE189A, PHE283B, PHE299B, PRO217B, PRO309B, SER138A, SER157A, SER179A, SER180B, SER185B, SER188B, SER191B, SER215B, SER280B, SER281B, THR127A, THR181B, THR209B, THR219B, THR443B, THR451B, TRP337B, TRP438B, TYR161A, TYR164A, TYR171B, TYR180A, TYR436B, TYR437B, TYR442B, TYR449B, VAL104A, VAL137A, VAL143A, VAL145A, VAL149A, VAL174B, VAL182B, VAL192B, VAL220B, VAL277B
• A-C: ALA104C, ALA150A, ALA153A, ALA159A, ARG106A, ARG110A, ARG111A, ARG114C, ARG118A, ARG122C, ARG131C, ARG136C, ARG142A, ARG152A, ARG93C, ASN116C, ASN132A, ASP103C, ASP129C, ASP146A, ASP148A, CYS134C, CYS138C, CYS154A, CYS158A, GLN105C, GLN107C, GLN116A, GLN117C, GLN118C, GLN122A, GLN124A, GLN124C, GLN125A, GLN125C, GLN126C, GLN132C, GLN136A, GLN139A, GLN139C, GLN86C, GLN97C, GLU103A, GLU107A, GLU108C, GLU109A, GLU111C, GLU144A, GLU90C, GLU91C, GLU96C, GLY156A, GLY99C, HIS102C, HIS114A, HIS131A, ILE106C, ILE112A, ILE113A, ILE119A, ILE130C, ILE133A, ILE140A, ILE147A, ILE88C, ILE94C, ILE98C, LEU105A, LEU108A, LEU109C, LEU115A, LEU123A, LEU123C, LEU126A, LEU127C, LEU128A, LEU129A, LEU141A, LEU151A, LEU184A, LEU89C, LEU95C, LYS134A, LYS155A, LYS83C, LYS87C, MET112C, MET121A, PHE119C, SER101C, SER110C, SER135C, SER137C, SER138A, SER157A, THR121C, THR127A, THR133C, THR135A, THR84C, TRP113C, TYR161A, VAL100C, VAL104A, VAL115C, VAL120C, VAL128C, VAL137A, VAL143A, VAL145A, VAL149A, VAL85C, VAL92C
• B-C: ALA104C, ALA143C, ALA163B, ALA175C, ALA183B, ALA198B, ALA206B, ALA216B, ALA219C, ALA245B, ALA284B, ALA298B, ALA419B, ARG114C, ARG122C, ARG131C, ARG136C, ARG170B, ARG177B, ARG187B, ARG197B, ARG202B, ARG206C, ARG212C, ARG223B, ARG237B, ARG241B, ARG285B, ARG435B, ARG93C, ASN116C, ASN144C, ASN221B, ASN238B, ASN282B, ASN296B, ASN307B, ASP103C, ASP129C, ASP140C, ASP199C, ASP207C, ASP234B, ASP251B, ASP448B, CYS134C, CYS138C, CYS214B, CYS218B, CYS222B, CYS306B, GLN105C, GLN107C, GLN117C, GLN118C, GLN124C, GLN125C, GLN126C, GLN132C, GLN139C, GLN164B, GLN177C, GLN195C, GLN201B, GLN210B, GLN249B, GLU108C, GLU111C, GLU168B, GLU179B, GLU194B, GLU204B, GLU205B, GLU212B, GLU213C, GLU225C, GLU244B, GLU255B, GLU293B, GLU311B, GLU90C, GLU91C, GLU96C, GLY184B, GLY200C, GLY214C, GLY216C, GLY229B, GLY229C, GLY239B, GLY240B, GLY295B, GLY99C, HIS102C, HIS195B, HIS198C, HIS231B, ILE106C, ILE130C, ILE146C, ILE167B, ILE176B, ILE178B, ILE194C, ILE207B, ILE235B, ILE248B, ILE297B, ILE305B, ILE88C, ILE94C, ILE98C, LEU109C, LEU123C, LEU127C, LEU167C, LEU180C, LEU186B, LEU193B, LEU196B, LEU218C, LEU228C, LEU252B, LEU89C, LEU95C, LYS145C, LYS171C, LYS172B, LYS175B, LYS176C, LYS190B, LYS199B, LYS208B, LYS211B, LYS232C, LYS258B, LYS303B, LYS87C, MET112C, MET189B, MET200B, MET203B, MET230B, PHE119C, PHE179C, PHE182C, PHE215C, PHE226C, PHE253B, PHE283B, PHE294B, PHE299B, PRO148C, PRO178C, PRO217B, PRO220C, PRO225B, PRO250B, PRO256B, SER101C, SER110C, SER135C, SER137C, SER180B, SER185B, SER188B, SER191B, SER201C, SER210C, SER215B, SER228B, SER254B, SER280B, SER281B, SER304B, THR121C, THR133C, THR141C, THR142C, THR150C, THR219B, THR221C, THR223C, THR224C, THR242B, THR289B, THR84C, TRP113C, TRP227C, TRP313B, TYR169C, TYR171B, TYR211C, TYR217C, TYR236B, TYR246B, TYR247B, TYR257B, TYR312B, TYR449B, VAL115C, VAL120C, VAL128C, VAL174B, VAL181C, VAL182B, VAL192B, VAL202C, VAL209C, VAL220B, VAL224B, VAL226B, VAL227B, VAL85C, VAL92C
• B-I: ALA377B, ALA419B, ALA429B, ALA430B, ARG385B, ARG3I, ARG416B, ARG426B, ASN384B, ASN404B, ASN406B, ASN425B, ASN431B, ASP383B, ASP403B, ASP418B, ASP452B, ASP453B, CYS414B, CYS427B, GLN379B, GLU417B, GLY1I, GLY450B, HIS2I, HIS390B, HIS413B, HIS428B, LEU380B, LYS412B, MET381B, MET387B, MET458B, PRO4I, SER415B, SER463B, THR386B, THR388B, THR411B, THR451B, TRP405B, TRP464B, TYR424B, TYR449B, VAL456B
• C-F: ALA284C, ALA284F, ALA368C, ALA368F, ARG245F, ARG256C, ARG256F, ARG353C, ARG353F, ARG373C, ARG373F, ASN286F, ASN351C, ASP250C, ASP281C, ASP281F, ASP283C, ASP283F, ASP289F, ASP292C, ASP292F, ASP295C, ASP295F, ASP296F, ASP299F, ASP362C, ASP372C, ASP372F, GLN298F, GLN397C, GLN397F, GLN398C, GLN398F, GLN399C, GLN399F, GLU252C, GLU252F, GLY282C, GLY282F, GLY285C, GLY285F, GLY290F, GLY294C, GLY294F, GLY349C, GLY350C, GLY393C, GLY393F, GLY395C, GLY395F, GLY396C, GLY396F, GLY402C, HIS255C, HIS255F, HIS371C, HIS371F, HIS394C, HIS394F, ILE366C, LYS300C, LYS300F, LYS354C, LYS354F, LYS401C, LYS401F, PHE291C, PHE291F, PHE293C, PHE293F, PHE301F, PRO297C, PRO297F, PRO360F, SER376C, SER392C, SER392F, SER400C, SER400F, THR254C, THR254F, THR355F, THR369C, THR369F, TRP251C, TRP367F, TRP370C, TRP370F, TRP374C, TRP374F, TYR257C, TYR257F, TYR302F, TYR352C, TYR375C
• C-G: ALA325C, ALA339C, ALA368C, ARG336C, ARG373C, ARG3G, ASN335C, ASP295C, ASP296C, ASP299C, ASP318C, ASP328C, ASP362C, ASP363C, ASP372C, CYS324C, CYS337C, GLN298C, GLN327C, GLU321C, GLU326C, GLY1G, GLY294C, GLY322C, GLY329C, GLY340C, GLY364C, HIS2G, HIS305C, HIS338C, HIS341C, ILE366C, LYS300C, LYS319C, MET334C, PHE291C, PHE293C, PHE301C, PHE359C, PRO297C, PRO360C, PRO4G, SER323C, THR303C, TRP374C, TYR302C, TYR320C, TYR352C, TYR361C
• C-H: ASP372C, HIS2H
• D-E: ALA150D, ALA153D, ALA159D, ALA163E, ALA177D, ALA178D, ALA182D, ALA183E, ALA198E, ALA206E, ALA216E, ALA447E, ARG106D, ARG110D, ARG111D, ARG117D, ARG118D, ARG142D, ARG152D, ARG160D, ARG165D, ARG170E, ARG177E, ARG187E, ARG188D, ARG197E, ARG202E, ARG276E, ARG285E, ARG435E, ASN120D, ASN132D, ASN169E, ASN171D, ASN183D, ASN282E, ASN296E, ASP146D, ASP148D, ASP167D, ASP278E, ASP448E, CYS154D, CYS158D, CYS214E, CYS218E, GLN116D, GLN122D, GLN124D, GLN125D, GLN130D, GLN136D, GLN139D, GLN164E, GLN173D, GLN201E, GLN210E, GLN446E, GLU109D, GLU144D, GLU163D, GLU166E, GLU169D, GLU173E, GLU175D, GLU179E, GLU187D, GLU190D, GLU194E, GLU204E, GLU205E, GLU212E, GLU311E, GLU445E, GLY156D, GLY184E, GLY279E, GLY295E, GLY310E, GLY434E, GLY439E, GLY450E, HIS114D, HIS131D, HIS195E, ILE112D, ILE113D, ILE119D, ILE133D, ILE140D, ILE147D, ILE167E, ILE176E, ILE178E, ILE181D, ILE207E, ILE308E, LEU105D, LEU108D, LEU115D, LEU123D, LEU126D, LEU128D, LEU129D, LEU141D, LEU151D, LEU162D, LEU166D, LEU172D, LEU174D, LEU184D, LEU186E, LEU193E, LEU196E, LEU213E, LYS134D, LYS155D, LYS168D, LYS170D, LYS172E, LYS175E, LYS176D, LYS185D, LYS190E, LYS199E, LYS208E, LYS211E, LYS444E, MET121D, MET189E, MET200E, MET203E, PHE186D, PHE189D, PHE283E, PHE299E, PRO217E, PRO309E, SER138D, SER157D, SER179D, SER180E, SER185E, SER188E, SER191E, SER215E, SER280E, SER281E, THR127D, THR135D, THR181E, THR209E, THR219E, THR443E, TRP337E, TRP438E, TYR101D, TYR161D, TYR164D, TYR171E, TYR436E, TYR437E, TYR442E, TYR449E, VAL137D, VAL143D, VAL145D, VAL149D, VAL174E, VAL182E, VAL192E, VAL220E, VAL277E
• D-F: ALA104F, ALA150D, ALA153D, ALA159D, ARG110D, ARG111D, ARG114F, ARG118D, ARG122F, ARG131F, ARG136F, ARG142D, ARG152D, ARG93F, ASN116F, ASN132D, ASP103F, ASP129F, ASP146D, ASP148D, CYS134F, CYS138F, CYS154D, CYS158D, GLN105F, GLN107F, GLN116D, GLN117F, GLN118F, GLN122D, GLN124D, GLN124F, GLN125D, GLN125F, GLN126F, GLN132F, GLN136D, GLN139D, GLN139F, GLN86F, GLN97F, GLU107D, GLU108F, GLU109D, GLU111F, GLU144D, GLU90F, GLU91F, GLU96F, GLY156D, GLY99F, HIS102F, HIS114D, HIS131D, ILE106F, ILE112D, ILE113D, ILE119D, ILE130F, ILE133D, ILE140D, ILE147D, ILE88F, ILE94F, ILE98F, LEU105D, LEU108D, LEU109F, LEU115D, LEU123D, LEU123F, LEU126D, LEU127F, LEU128D, LEU129D, LEU141D, LEU151D, LEU89F, LEU95F, LYS134D, LYS155D, LYS83F, LYS87F, MET112F, MET121D, PHE119F, SER101F, SER110F, SER135F, SER137F, SER138D, SER157D, THR121F, THR127D, THR133F, THR135D, THR84F, TRP113F, TYR101D, TYR161D, VAL100F, VAL104D, VAL115F, VAL120F, VAL128F, VAL137D, VAL143D, VAL145D, VAL149D, VAL85F, VAL92F
• E-F: ALA104F, ALA143F, ALA183E, ALA198E, ALA206E, ALA216E, ALA219F, ALA245E, ALA284E, ALA298E, ALA419E, ARG114F, ARG122F, ARG131F, ARG136F, ARG170E, ARG177E, ARG187E, ARG197E, ARG202E, ARG206F, ARG212F, ARG223E, ARG237E, ARG241E, ARG285E, ARG435E, ARG93F, ASN116F, ASN144F, ASN221E, ASN238E, ASN282E, ASN296E, ASN307E, ASP103F, ASP129F, ASP140F, ASP199F, ASP207F, ASP234E, ASP251E, ASP448E, CYS134F, CYS138F, CYS214E, CYS218E, CYS222E, CYS306E, GLN105F, GLN107F, GLN117F, GLN118F, GLN124F, GLN125F, GLN126F, GLN132F, GLN139F, GLN164E, GLN177F, GLN195F, GLN201E, GLN210E, GLN249E, GLN97F, GLU108F, GLU111F, GLU168E, GLU173E, GLU179E, GLU194E, GLU204E, GLU205E, GLU212E, GLU213F, GLU225F, GLU244E, GLU255E, GLU293E, GLU311E, GLU90F, GLU91F, GLU96F, GLY184E, GLY214F, GLY216F, GLY229E, GLY229F, GLY239E, GLY240E, GLY295E, GLY310E, GLY99F, HIS102F, HIS195E, HIS196F, HIS198F, ILE106F, ILE130F, ILE146F, ILE167E, ILE176E, ILE178E, ILE194F, ILE207E, ILE235E, ILE248E, ILE297E, ILE305E, ILE88F, ILE94F, ILE98F, LEU109F, LEU123F, LEU127F, LEU167F, LEU180F, LEU186E, LEU193E, LEU196E, LEU213E, LEU218F, LEU222F, LEU228F, LEU252E, LEU95F, LYS145F, LYS171F, LYS172E, LYS175E, LYS176F, LYS190E, LYS199E, LYS208E, LYS211E, LYS232F, LYS258E, LYS303E, LYS83F, LYS87F, MET112F, MET189E, MET200E, MET203E, MET230E, PHE119F, PHE179F, PHE182F, PHE215F, PHE226F, PHE294E, PHE299E, PRO148F, PRO178F, PRO217E, PRO220F, PRO225E, PRO250E, PRO256E, SER101F, SER110F, SER135F, SER137F, SER180E, SER185E, SER188E, SER191E, SER201F, SER210F, SER215E, SER228E, SER280E, SER281E, SER304E, THR121F, THR133F, THR141F, THR142F, THR181E, THR209E, THR219E, THR221F, THR223F, THR224F, THR242E, THR289E, THR84F, TRP113F, TRP227F, TRP313E, TYR169F, TYR171E, TYR211F, TYR217F, TYR236E, TYR246E, TYR247E, TYR257E, TYR312E, TYR449E, VAL100F, VAL115F, VAL120F, VAL128F, VAL174E, VAL181F, VAL182E, VAL192E, VAL202F, VAL209F, VAL220E, VAL224E, VAL226E, VAL227E, VAL85F, VAL92F
• E-J: ALA377E, ALA429E, ALA430E, ARG385E, ARG3J, ARG416E, ARG426E, ASN384E, ASN406E, ASN425E, ASN431E, ASP383E, ASP403E, ASP418E, ASP452E, ASP453E, CYS414E, CYS427E, GLN379E, GLU417E, GLY1J, GLY450E, GLY462E, HIS2J, HIS390E, HIS413E, HIS428E, ILE389E, LEU380E, LYS412E, MET381E, MET387E, MET458E, PRO4J, SER415E, SER463E, THR386E, THR388E, THR411E, THR451E, TRP405E, TRP464E, TYR424E, TYR442E, TYR449E, VAL456E
• F-H: ALA325F, ALA339F, ALA368F, ARG336F, ARG373F, ARG3H, ASN335F, ASP292F, ASP295F, ASP296F, ASP299F, ASP318F, ASP328F, ASP362F, ASP363F, ASP372F, CYS324F, CYS337F, GLN298F, GLN327F, GLU321F, GLU326F, GLY1H, GLY294F, GLY322F, GLY329F, GLY340F, GLY364F, HIS2H, HIS305F, HIS338F, HIS341F, ILE366F, LYS300F, LYS319F, MET334F, PHE291F, PHE293F, PHE359F, PRO360F, PRO4H, SER323F, THR303F, THR304F, TRP374F, TYR302F, TYR320F, TYR352F, TYR361F