1N36
structure of the thermus thermophilus 30s ribosomal subunit in the presence of crystallographically disordered codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position
Total interactions analyzed 210
Total true interactions 25
Strongest Interaction Chains J-N
Int. Res. 55
Norm. En. per Res. -4.5704
Hub Node C(4)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
B-C 0.0 0.0 -0.0009 -0.0009 2 0 0 2 0 1 1
B-E 0.0 0.0 -0.5882 -0.5882 9 0 0 127 0 0 2
B-H -7.2496 -35.8695 -74.8644 -117.9836 34 14 0 3050 1 17 18
C-D 0.0 0.0 -0.3216 -0.3216 2 0 0 51 0 0 6
C-E 0.0 -21.598 -4.7249 -26.3229 12 3 0 572 0 4 3
C-J 0.0 4.7967 -78.8743 -74.0776 54 14 2 3115 0 13 16
C-N -20.087 14.2577 -189.034 -194.8633 73 26 3 8804 0 20 44
D-E -4.9373 -42.1367 -52.4425 -99.5165 51 9 0 3350 4 7 10
E-H -26.4831 -68.085 -134.471 -229.0391 64 20 2 6246 5 37 42
F-O 0.0 0.0 -2.2954 -2.2954 6 0 0 189 0 5 3
F-R -35.3561 -42.7902 -238.468 -316.6143 89 37 9 11328 1 14 22
G-I 0.0 2.5305 -35.888 -33.3575 38 6 5 2445 0 5 7
G-K 0.0 0.0 -20.7059 -20.7059 21 0 2 1135 0 2 4
G-V 0.0 0.0 -0.0007 -0.0007 2 0 0 2 0 0 0
H-L 0.0 0.0 -7.4355 -7.4355 10 0 0 405 0 0 1
H-Q -4.3002 6.6196 -22.2972 -19.9778 14 3 0 1200 0 2 8
I-J 0.0 -1.0822 -34.4508 -35.533 19 2 0 1444 0 10 16
I-N 0.0 0.0 -6.3923 -6.3923 9 3 0 385 0 0 1
J-N -11.2408 -28.2391 -211.894 -251.3738 55 36 8 8981 2 15 34
K-R -18.9927 -21.9786 -94.0388 -135.0102 38 5 2 3735 2 15 21
L-Q 0.0 0.0 -44.7003 -44.7003 23 4 4 2384 0 0 7
M-S -3.9375 34.8357 -99.5221 -68.624 47 8 0 4314 0 8 22
M-V 0.0 0.8851 -1.0143 -0.1293 8 0 0 210 0 3 9
N-S 0.0 0.0 -0.0034 -0.0034 2 0 0 4 0 0 0
O-Q 0.0 -1.2012 -0.2087 -1.41 12 0 0 76 0 9 7