1N34
structure of the thermus thermophilus 30s ribosomal subunit in the presence of codon and crystallographically disordered near-cognate transfer rna anticodon stem-loop mismatched at the first codon position
Total interactions analyzed 231
Total true interactions 24
Strongest Interaction Chains J-N
Int. Res. 55
Norm. En. per Res. -4.8016
Hub Node C(4)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
B-C 0.0 0.0 -0.3276 -0.3276 3 0 0 72 0 2 3
B-E 0.0 0.0 -0.5699 -0.5699 8 0 0 83 0 1 2
B-H -8.582 -39.7081 -68.4422 -116.7322 33 12 0 2992 2 17 18
C-D 0.0 0.0 -0.3869 -0.3869 3 0 0 75 0 0 5
C-E -3.2984 -32.8861 -11.5208 -47.7052 16 1 0 763 2 4 4
C-J 0.0 0.8503 -86.0952 -85.2449 57 12 2 3314 0 14 19
C-N -2.6309 10.7712 -179.85 -171.7098 70 25 4 8735 0 21 41
D-E -8.1227 -10.1992 -36.2873 -54.6093 50 7 0 3068 2 9 12
E-H -20.7158 -46.8875 -140.713 -208.3163 64 24 2 6553 4 40 41
F-O 0.0 0.0 -0.5114 -0.5114 4 0 0 84 0 3 3
F-R -50.1923 -44.0508 -268.228 -362.471 85 47 11 11119 2 14 26
G-I 0.0 3.3531 -26.7617 -23.4086 33 5 4 1832 0 3 8
G-K -5.2436 0.0 -37.3093 -42.5529 22 0 1 1559 0 2 7
H-L 0.0 0.0 -10.6368 -10.6368 10 0 0 467 0 0 2
H-Q 0.0 5.2496 -23.8015 -18.5519 14 4 0 1326 0 2 9
I-J 0.0 0.0 -33.0991 -33.0991 19 5 0 1459 0 12 20
I-N 0.0 0.0 -12.5997 -12.5997 8 0 0 414 0 0 1
J-N -24.171 -42.1059 -197.81 -264.0869 55 27 5 8504 4 14 34
K-R -14.9169 -9.5437 -67.0628 -91.5234 32 3 2 3151 2 15 18
L-Q 0.0 0.0 -53.5394 -53.5394 23 4 4 2446 0 0 8
M-S -6.8287 1.0035 -73.6921 -79.5173 45 7 0 3592 0 8 23
M-V 0.0 0.0 -2.0631 -2.0631 9 0 0 250 0 3 9
N-S 0.0 0.0 -0.048 -0.048 5 0 0 22 0 1 2
O-Q 0.0 -1.1017 -0.3081 -1.4097 11 0 0 86 0 7 6