1N33
structure of the thermus thermophilus 30s ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin
Total interactions analyzed 253
Total true interactions 25
Strongest Interaction Chains J-N
Int. Res. 57
Norm. En. per Res. -5.0959
Hub Node C(4)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
B-C 0.0 0.0 -5.1604 -5.1604 5 0 0 229 0 1 4
B-E 0.0 0.0 -0.0079 -0.0079 6 0 0 12 0 0 2
B-H -10.7178 -35.2829 -63.0936 -109.0943 35 11 0 2947 2 17 17
C-D 0.0 6.1204 -5.8595 0.2609 5 0 0 253 0 0 6
C-E -2.5546 -25.5189 -21.5587 -49.6322 16 3 0 949 2 4 3
C-J -4.0199 4.3036 -97.1492 -96.8655 58 3 2 3740 0 16 20
C-N -16.3398 10.9463 -204.614 -210.0075 70 11 4 8537 0 18 34
D-E 0.0 -33.8043 -33.2669 -67.0712 45 0 0 2006 2 6 9
E-H -25.5758 -36.6636 -126.917 -189.1564 63 16 2 6525 3 41 41
F-O 0.0 0.0 -3.3899 -3.3899 4 0 0 174 0 2 2
F-R -41.8323 -50.8474 -284.441 -377.1207 83 24 11 11017 2 13 23
G-I 0.0 2.0576 -28.3681 -26.3105 32 4 4 1866 0 3 8
G-K 0.0 0.0 -41.9177 -41.9177 23 1 3 1982 0 2 5
G-V 0.0 0.0 -0.0005 -0.0005 2 0 0 1 0 1 0
H-L 0.0 0.0 -8.1929 -8.1929 10 2 0 418 0 0 1
H-Q 0.0 4.15 -23.4366 -19.2866 15 1 0 1143 0 2 8
I-J 0.0 -0.9341 -34.6173 -35.5514 18 0 0 1459 0 12 17
I-N 0.0 0.0 -15.187 -15.187 6 1 0 438 0 0 0
J-N -20.1835 -45.9179 -224.366 -290.4673 57 31 6 8948 3 14 36
K-R -20.0157 -29.1572 -79.6612 -128.8341 39 17 2 3979 2 14 18
L-Q 0.0 0.0 -48.7305 -48.7305 20 4 4 2227 0 0 7
M-S -4.8442 39.5031 -67.2041 -32.5451 45 4 0 3445 0 9 19
M-V 0.0 0.0 -0.9561 -0.9561 12 0 0 202 0 2 9
N-S 0.0 0.0 -0.0783 -0.0783 3 0 0 33 0 1 0
O-Q 0.0 0.0 -0.3283 -0.3283 11 0 0 74 0 7 6