1N32
structure of the thermus thermophilus 30s ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the first codon position at the a site with paromomycin
Total interactions analyzed 253
Total true interactions 25
Strongest Interaction Chains J-N
Int. Res. 54
Norm. En. per Res. -5.856
Hub Node C(4)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
B-C 0.0 0.0 -5.2662 -5.2662 8 2 0 295 0 3 4
B-E 0.0 0.0 -0.016 -0.016 5 0 0 18 0 0 2
B-H -28.6449 -41.1292 -67.7467 -137.5208 33 12 0 2863 2 17 17
C-D 0.0 4.4465 -0.5041 3.9424 7 0 0 118 0 0 8
C-E -3.1046 -25.4326 -14.743 -43.2802 17 2 0 723 2 4 4
C-J 0.0 10.3404 -78.0519 -67.7115 59 5 2 3436 0 16 25
C-N -17.9313 7.6167 -219.962 -230.2766 72 15 3 9240 0 19 40
D-E 0.0 -31.4076 -27.7719 -59.1795 41 1 0 1669 2 6 9
E-H -41.2205 -33.0579 -156.245 -230.5235 63 18 2 6711 2 42 42
F-O 0.0 0.0 -3.3739 -3.3739 5 0 0 188 0 2 3
F-R -77.6 -42.428 -278.6 -398.628 90 42 9 11010 2 14 22
G-I 0.0 1.8238 -31.4286 -29.6048 35 4 4 1890 0 4 8
G-K 0.0 0.0 -55.3783 -55.3783 25 2 3 2250 0 2 7
G-V 0.0 0.0 -0.0028 -0.0028 2 0 0 4 0 1 0
H-L 0.0 0.0 -8.6906 -8.6906 10 1 0 434 0 0 1
H-Q 0.0 3.3434 -26.1237 -22.7803 15 2 0 1212 0 2 8
I-J 0.0 0.0 -34.4567 -34.4567 18 0 0 1415 0 11 16
I-N -15.7523 0.0 -16.4692 -32.2215 8 1 0 551 0 0 0
J-N -40.6123 -47.1347 -228.477 -316.2241 54 24 7 8808 5 13 36
K-R -42.82 -17.8187 -73.3052 -133.9438 37 18 2 3840 1 14 18
L-Q 0.0 0.0 -56.7786 -56.7786 22 1 4 2382 0 0 8
M-S -2.631 22.2904 -68.4306 -48.7712 43 9 0 3689 0 9 23
M-V 0.0 0.0 -2.1667 -2.1667 12 0 0 330 0 4 9
O-Q 0.0 -1.0698 -0.2923 -1.3622 9 0 0 70 0 6 6
S-V 0.0 0.0 -0.0458 -0.0458 2 0 0 29 0 0 0