1MUJ

crystal structure of murine class ii mhc i-ab in complex with a human clip peptide

• Total interactions analyzed: 3
• Total true interactions: 3
• Strongest Interaction:
  • Chains: A-B
  • Int. Res.: 205
  • Norm. En. per Res.: -5.6805
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-225.8714	-162.6753	-775.964	-1164.5106	205	43	13	28996	12	52	54
A-C	-29.8569	-2.8265	-187.075	-219.7584	61	22	5	7396	0	3	0
B-C	-28.1676	10.2076	-211.051	-229.0109	68	18	2	7090	0	9	8

Interface residues

• A-B: ALA125B, ALA3A, ALA52A, ALA58B, ALA82A, ALA86A, ARG141A, ARG149B, ARG23B, ARG25B, ARG29B, ARG34B, ARG39B, ARG55B, ARG5B, ARG70B, ARG76A, ARG80B, ARG92B, ARG93B, ASN103A, ASN111A, ASN140A, ASN150B, ASN19B, ASN33B, ASN62A, ASN69A, ASN78A, ASN82B, ASN84A, ASN98B, ASP0A, ASP121B, ASP142A, ASP152B, ASP18A, ASP27A, ASP29A, ASP41B, ASP43B, ASP4A, ASP57B, CYS117B, CYS15B, CYS79B, GLN10B, GLN14A, GLN156B, GLN21A, GLN50A, GLN61A, GLU14B, GLU25A, GLU2A, GLU30A, GLU35B, GLU36B, GLU47A, GLU4B, GLU52B, GLU74B, GLU84B, GLU85A, GLU86B, GLU95B, GLY13B, GLY151B, GLY17A, GLY20A, GLY20B, GLY28A, GLY49A, GLY54B, GLY71A, GLY7A, GLY84B, GLY9A, HIS146A, HIS167A, HIS5A, HIS68A, HIS6B, HIS81B, HIS88B, ILE101B, ILE106A, ILE10A, ILE112A, ILE148B, ILE19A, ILE1A, ILE24B, ILE31B, ILE63A, LEU148A, LEU158B, LEU31A, LEU45A, LEU51A, LEU53B, LEU70A, LEU73A, LEU75B, LEU91B, LEU94B, LEU98A, LYS126B, LYS147A, LYS67A, LYS75A, LYS94A, MET12B, MET44A, PHE108A, PHE113A, PHE11B, PHE122B, PHE137A, PHE138A, PHE145A, PHE155B, PHE17B, PHE24A, PHE26A, PHE32A, PHE48A, PHE54A, PHE7B, PHE92A, PRO114A, PRO115A, PRO124B, PRO16A, PRO46A, PRO56B, PRO81A, PRO85B, PRO93A, PRO96A, SER102B, SER118B, SER11A, SER136A, SER144A, SER149A, SER15A, SER3B, SER53A, SER77A, SER79A, SER90B, SER95A, THR104A, THR120B, THR135A, THR154B, THR18B, THR21B, THR23A, THR28B, THR51B, THR74A, THR80A, THR83A, THR87B, THR89B, THR8A, TRP153B, TRP168A, TRP43A, TRP61B, TYR123B, TYR133A, TYR13A, TYR143A, TYR150A, TYR16B, TYR22A, TYR26B, TYR30B, TYR32B, TYR37B, TYR60B, TYR83B, TYR9A, TYR9B, VAL100B, VAL116A, VAL116B, VAL119B, VAL12A, VAL139A, VAL157B, VAL27B, VAL38B, VAL50B, VAL65A, VAL66A, VAL6A, VAL72A, VAL78B, VAL8B, VAL97A, VAL99B
• A-C: ALA101C, ALA52A, ALA64A, ALA94C, ARG76A, ARG92C, ASN62A, ASN69A, ASP55A, GLN100C, GLN50A, GLN57A, GLN61A, GLU25A, GLY49A, GLY58A, GLY59A, GLY71A, GLY7A, GLY9A, HIS68A, ILE10A, ILE63A, LEU31A, LEU51A, LEU60A, LEU70A, LEU73A, LEU97C, LEU98C, LYS67A, LYS75A, LYS90C, MET91C, MET93C, MET99C, PHE24A, PHE26A, PHE32A, PHE48A, PHE54A, PRO56A, PRO87C, PRO96C, SER11A, SER53A, SER77A, SER89C, THR23A, THR41A, THR74A, THR8A, THR95C, TRP43A, TYR22A, TYR9A, VAL34A, VAL65A, VAL66A, VAL72A, VAL88C
• B-C: ALA101C, ALA58B, ALA73B, ALA94C, ARG29B, ARG70B, ARG72B, ARG80B, ARG92C, ASN62B, ASN82B, ASP57B, ASP76B, CYS15B, CYS79B, GLN100C, GLN10B, GLN64B, GLU14B, GLU66B, GLU69B, GLU74B, GLU84B, GLU86B, GLY13B, GLY54B, GLY84B, HIS47B, HIS81B, HIS88B, ILE67B, LEU53B, LEU68B, LEU97C, LEU98C, LYS90C, MET12B, MET91C, MET93C, MET99C, PHE11B, PRO56B, PRO85B, PRO87C, PRO96C, SER63B, SER89C, SER90B, THR28B, THR71B, THR77B, THR87B, THR89B, THR95C, TRP153B, TRP61B, TYR26B, TYR30B, TYR32B, TYR37B, TYR40B, TYR60B, TYR83B, TYR9B, VAL27B, VAL38B, VAL78B, VAL88C