1MNF
domain motions in groel upon binding of an oligopeptide
Total interactions analyzed 378
Total true interactions 82
Strongest Interaction Chains L-Z
Int. Res. 43
Norm. En. per Res. -4.2755
Hub Node A(7)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-O -15.3577 9.7524 -171.467 -177.0723 43 8 5 6227 0 5 2
A-B -99.4301 -80.1886 -383.112 -562.7308 178 31 7 16162 8 82 76
A-P -3.6842 2.7071 -14.8916 -15.8686 10 0 0 686 0 0 1
A-G -120.3167 -82.8437 -398.268 -601.4284 178 34 10 16949 11 85 81
A-U -2.5885 0.0 -9.9017 -12.4902 8 2 0 401 0 0 0
A-L -14.2445 3.1996 -34.3855 -45.4304 22 4 1 1439 0 6 5
A-M 0.0 28.7242 -19.5744 9.1498 24 1 6 1243 0 4 3
O-B -4.5812 0.0 -12.2413 -16.8225 8 0 0 410 0 0 0
O-P 0.0 0.0 -5.5873 -5.5873 12 0 0 367 0 0 0
O-G -8.4553 2.5494 -18.9104 -24.8163 11 1 0 799 0 0 1
O-U 0.0 0.0 -8.1382 -8.1382 12 0 0 452 0 0 0
B-P -18.6069 10.0396 -169.416 -177.9834 43 11 5 6138 0 5 2
B-C -129.0502 -84.3311 -392.718 -606.0993 179 36 9 17021 11 85 81
B-Q -7.285 2.6779 -17.2865 -21.8936 10 1 0 768 0 0 1
B-D 0.0 0.0 -0.0006 -0.0006 2 0 0 2 0 0 0
B-K -16.0706 3.3491 -31.3748 -44.0962 22 1 1 1357 0 6 5
B-L 0.0 23.9781 -20.9088 3.0693 30 1 4 1396 0 15 10
P-C -2.377 0.0 -6.2955 -8.6726 8 2 0 411 0 0 0
P-Q 0.0 0.0 -7.5297 -7.5297 12 0 0 440 0 0 0
C-Q -20.2878 9.9171 -167.998 -178.3687 43 11 5 6222 0 5 2
C-D -109.6669 -82.3946 -384.497 -576.5585 173 31 8 16036 8 81 76
C-R 0.0 2.565 -13.7726 -11.2076 10 0 0 656 0 0 1
C-J -14.1844 2.1695 -36.7194 -48.7344 23 4 1 1491 0 6 5
C-K 0.0 29.597 -25.742 3.855 30 2 6 1582 0 16 11
Q-D -6.1601 0.0 -10.7171 -16.8772 8 1 0 419 0 0 0
Q-R 0.0 0.0 -5.4768 -5.4768 12 0 0 366 0 0 0
D-R -18.3998 9.255 -168.309 -177.4538 43 12 5 6224 0 5 2
D-E -112.7342 -84.0105 -403.943 -600.6877 182 38 8 17194 11 86 82
D-S -6.6149 2.6042 -16.6895 -20.7002 10 0 0 745 0 0 1
D-I -14.3274 3.1923 -34.5938 -45.7288 22 3 1 1438 0 6 5
D-J 0.0 27.4403 -20.6898 6.7505 30 1 4 1374 0 14 9
R-E -3.516 0.0 -12.3999 -15.9159 9 2 0 420 0 0 0
R-S 0.0 0.0 -6.8198 -6.8198 12 0 0 413 0 0 0
E-S -19.5101 9.6557 -168.837 -178.6914 43 12 5 6178 0 5 2
E-F -116.2028 -83.2959 -379.356 -578.8546 178 34 10 16604 10 83 82
E-T 0.0 2.5671 -15.1957 -12.6286 10 0 0 690 0 0 1
E-H -18.7133 3.2505 -37.7328 -53.1956 23 5 1 1582 1 6 5
E-I 0.0 26.7306 -24.0278 2.7028 30 1 4 1545 0 18 11
S-F -3.3448 0.0 -11.2155 -14.5603 8 2 0 421 0 0 0
S-T 0.0 0.0 -6.1109 -6.1109 12 0 0 391 0 0 0
F-T -20.8282 9.3463 -163.215 -174.6968 43 11 5 6087 0 5 2
F-G -96.6639 -79.198 -367.918 -543.7799 175 30 7 15979 8 81 79
F-U -3.7487 2.6224 -14.0122 -15.1385 10 0 0 665 0 0 1
F-H 0.0 27.7992 -24.4555 3.3437 30 1 5 1540 0 16 11
F-N -13.2109 1.1787 3 GLU461F, GLU461N, SER463F
T-G -4.171 0.0 -13.1047 -17.2757 9 1 0 459 0 0 0
T-U 0.0 0.0 -6.1627 -6.1627 12 1 0 394 0 0 0
G-U -18.4685 10.0537 -173.958 -182.3728 43 14 5 6284 0 5 2
G-M -14.5493 3.2476 0.0 -11.3017 3 0 0 0 0 0 0
G-N 0.0 27.4289 4 GLU434G, GLU434N, LYS441G, LYS441N
H-V -21.7315 9.9807 -167.126 -178.8768 43 15 5 6162 0 5 2
H-I -127.996 -81.7885 -390.623 -600.4075 181 38 8 16857 10 86 83
H-W 0.0 2.5846 -17.9296 -15.345 10 0 0 750 0 0 1
H-N -114.1317 -84.0257 40 ARG231H, ARG268N, ARG285H, ARG36N, ASN112H, ASN37N, ASP115H, ASP25N, ASP283H, ASP41N, ASP523H, ASP5H, CYS458N, CYS519H, GLU216N, GLU255H, GLU257H, GLU303H, GLU308H, GLU310H, GLU386N, GLU518H, GLU59N, GLU61N, GLU63N, LYS226H, LYS242N, LYS245N, LYS272N, LYS277H, LYS28N, LYS34N, LYS4H, LYS526H, LYS65H, THR181N, THR516H, THR522H, VAL39N, VAL521H
H-2 -4.424 0.0 2 ARG231H, PRO6062
V-I -3.694 0.0 -12.3661 -16.0601 8 1 0 390 0 0 0
V-W 0.0 0.0 -7.2868 -7.2868 12 1 0 460 0 0 0
V-N 0.0 2.6791 2 ARG268N, HIS611V
I-W -26.6982 10.1409 -154.437 -170.9943 43 11 5 6157 0 5 2
I-J -104.4707 -80.1179 -379.93 -564.5185 179 32 8 16263 8 83 80
I-X 0.0 2.6001 -16.5195 -13.9194 10 0 0 711 0 0 1
W-J -4.8249 0.0 -10.3918 -15.2167 8 1 0 415 0 0 0
W-X 0.0 0.0 -7.056 -7.056 12 1 0 438 0 0 0
J-X -21.3215 9.8267 -161.709 -173.2038 43 9 5 6088 0 5 2
J-K -110.399 -83.7512 -386.922 -581.0722 177 33 8 16367 9 83 77
J-Y 0.0 2.5776 -14.6011 -12.0235 10 0 0 670 0 0 1
X-K -4.1375 0.0 -12.0129 -16.1504 8 0 0 384 0 0 0
X-Y 0.0 0.0 -5.5893 -5.5893 12 0 0 379 0 0 0
K-Y -19.8783 9.196 -161.024 -171.7063 43 13 5 6107 0 5 2
K-L -103.5373 -81.4308 -354.629 -539.597 174 27 9 15663 9 81 75
K-Z -11.595 2.6366 -13.8897 -22.8481 10 0 0 694 0 0 1
Y-L -4.158 0.0 -12.3258 -16.4838 8 3 0 425 0 0 0
Y-Z 0.0 0.0 -6.3758 -6.3758 12 0 0 392 0 0 0
L-Z -16.784 9.3246 -176.385 -183.8444 43 16 5 6435 0 5 2
L-M -110.6229 -82.9845 -150.483 -344.0904 118 9 3 6539 7 31 41
L-1 -6.1943 2.5938 3 ARG268L, HIS6111, SER6011
Z-M -3.0532 0.0 0.0 -3.0532 2 0 0 0 0 0 0
M-1 -20.4411 9.7549 6 ARG231M, ARG268M, GLU257M, GLY6081, HIS6111, PRO6121
M-N -106.2288 -80.9706 37 ALA2N, ARG268M, ARG285N, ARG36M, ASN112N, ASN37M, ASP115N, ASP25M, ASP41M, ASP523N, ASP5N, CYS458M, CYS519N, GLU216M, GLU255N, GLU257N, GLU303N, GLU308N, GLU310N, GLU386M, GLU518N, GLU59M, GLU61M, GLU63M, LYS226N, LYS242M, LYS245M, LYS272M, LYS277N, LYS34M, LYS4N, LYS526N, LYS65N, THR516N, THR522N, VAL39M, VAL521N
M-2 -9.5771 2.729 4 ARG268M, HIS6112, PRO6122, SER6012
1-N -4.2017 0.0 2 ARG231N, PRO6061
N-2 -20.9379 10.1628 6 ARG231N, ARG268N, GLU257N, GLY6082, HIS6112, PRO6122