1MDY

crystal structure of myod bhlh domain bound to dna: perspectives on dna recognition and implications for transcriptional activation

• Total interactions analyzed: 28
• Total true interactions: 2
• Strongest Interaction:
  • Chains: C-D
  • Int. Res.: 75
  • Norm. En. per Res.: -2.5323
• Hub Node: A(1)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	0.0	-0.6125	-184.354	-184.9665	76	2	21	10112	0	19	22
C-D	0.0	-0.8573	-189.063	-189.9203	75	5	21	10375	0	20	22

Interface residues

• A-B: ALA128A, ALA128B, ALA153A, ALA153B, ALA162A, ALA162B, ARG121A, ARG121B, ARG134A, ARG134B, ARG143B, ARG151A, ARG151B, ARG155A, ARG155B, ARG165B, ASN126A, ASN126B, ASN152A, ASN152B, ASP166A, GLN161A, GLN161B, GLU127A, GLU127B, GLU130A, GLU130B, GLU148A, GLU148B, GLU158A, GLU158B, GLY159A, GLY159B, ILE149A, ILE149B, ILE154A, ILE154B, ILE157A, ILE157B, LEU122A, LEU122B, LEU132A, LEU132B, LEU150A, LEU150B, LEU160A, LEU160B, LEU163A, LEU163B, LEU164A, LEU164B, LYS124A, LYS124B, LYS133A, LYS133B, LYS146A, LYS146B, PHE129A, PHE129B, PRO145A, PRO145B, SER123A, SER123B, SER135A, SER135B, SER137A, THR131A, THR131B, THR136A, THR136B, TYR156A, TYR156B, VAL125A, VAL125B, VAL147A, VAL147B
• C-D: ALA128C, ALA128D, ALA153C, ALA153D, ALA162C, ALA162D, ARG121C, ARG121D, ARG134C, ARG134D, ARG151C, ARG151D, ARG155C, ARG155D, ARG165C, ARG165D, ASN126C, ASN126D, ASN152C, ASN152D, GLN161C, GLN161D, GLU127C, GLU127D, GLU130C, GLU130D, GLU148C, GLU148D, GLU158C, GLU158D, GLY159C, GLY159D, ILE149C, ILE149D, ILE154C, ILE154D, ILE157C, ILE157D, LEU122C, LEU122D, LEU132C, LEU132D, LEU150C, LEU150D, LEU160C, LEU160D, LEU163C, LEU163D, LEU164C, LEU164D, LYS124C, LYS124D, LYS133C, LYS133D, LYS146C, LYS146D, PHE129C, PHE129D, PRO145C, PRO145D, SER135C, SER135D, SER137C, SER137D, SER138D, THR131C, THR131D, THR136C, THR136D, TYR156C, TYR156D, VAL125C, VAL125D, VAL147C, VAL147D