1M1K
co-crystal structure of azithromycin bound to the 50s ribosomal subunit of haloarcula marismortui
Total interactions analyzed 435
Total true interactions 28
Strongest Interaction Chains E-2
Int. Res. 16
Norm. En. per Res. -4.077
Hub Node E(5)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
C-N 0.0 0.0 -0.0618 -0.0618 3 0 0 21 0 0 2
C-1 -80.4857 -22.1819 -288.396 -391.0636 111 18 12 12205 2 22 24
D-K -18.1525 -22.9943 -45.8164 -86.9632 33 3 0 1933 1 3 0
D-L -7.1591 8.5275 -37.1338 -35.7655 39 4 0 2616 0 11 20
D-V -14.2434 7.06 -39.8645 -47.0479 24 5 0 1341 0 5 5
E-M 0.0 0.0 -0.0039 -0.0039 2 0 0 5 0 0 3
E-P 0.0 4.4214 -43.3268 -38.9054 22 5 0 1684 0 8 6
E-U 0.0 0.8575 -14.1391 -13.2816 14 0 0 808 0 3 10
E-Z 0.0 0.0 -0.0129 -0.0129 2 0 0 10 0 0 1
E-2 -5.9343 -16.4122 -42.8862 -65.2327 16 3 0 1414 2 6 6
F-O -12.6837 -0.6339 -41.7549 -55.0726 27 11 1 2217 0 13 20
G-K -10.3274 7.4758 -67.3169 -70.1685 26 5 1 2462 0 7 7
H-N -30.5478 -11.7393 -176.821 -219.1081 73 13 3 7907 4 28 27
J-R 0.0 0.0 -0.028 -0.028 3 0 0 10 0 0 0
L-V -44.2567 -16.4224 -140.006 -200.685 54 4 3 5711 1 17 19
M-N 0.0 0.0 -0.0155 -0.0155 2 0 0 13 0 0 1
M-P 0.0 0.0 -11.2284 -11.2284 24 0 0 890 0 5 5
M-Z 0.0 0.0 -11.7651 -11.7651 14 1 0 382 0 0 12
M-4 0.0 0.0 -4.3992 -4.3992 5 0 0 194 0 0 2
N-4 0.0 -1.1943 -6.1619 -7.3562 20 9 0 1820 0 4 1
O-R -3.2418 1.6126 -94.1498 -95.779 56 5 3 4860 0 10 15
S-Y 0.0 0.0 -0.0834 -0.0834 3 0 0 7 0 0 8
S-2 0.0 0.0 -0.0003 -0.0003 2 0 0 1 0 0 0
S-3 0.0 0.0 -0.1002 -0.1002 4 0 0 32 0 0 1
T-W 0.0 -3.3176 -57.5301 -60.8477 36 3 5 3017 0 11 14
T-3 -20.3003 -2.7267 -42.4635 -65.4905 25 3 0 2237 0 19 11
U-3 0.0 0.0 -0.0277 -0.0277 2 0 0 6 0 2 2
2-3 0.0 -4.6174 -44.5646 -49.182 23 6 0 1679 0 19 16