1M19
ligand binding alters the structure and dynamics of nucleosomal dna
Total interactions analyzed 45
Total true interactions 23
Strongest Interaction Chains E-F
Int. Res. 158
Norm. En. per Res. -5.7244
Hub Node A(5)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
Download
Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -114.1546 -38.8613 -722.894 -875.9099 156 26 45 30442 2 57 63
A-C -6.1385 -28.8839 -8.9932 -44.0156 15 0 0 386 2 5 8
A-E -20.6596 -128.1032 -163.378 -312.1408 63 3 8 7095 7 26 38
A-G -38.5633 1.0828 -133.193 -170.6735 70 5 5 6141 0 7 9
A-H 0.0 0.0 -0.0615 -0.0615 4 0 0 29 0 2 0
B-C 0.0 0.0 -0.3481 -0.3481 7 0 0 74 0 2 3
B-D -14.1199 -15.4502 -134.677 -164.2472 51 4 1 4850 2 19 26
B-G -42.1074 0.0 -91.7724 -133.8798 46 4 5 3941 0 0 6
B-H -2.8054 -17.0165 -72.2873 -92.1091 30 1 2 2317 1 5 2
C-D -109.3568 -57.7851 -753.708 -920.8499 172 27 47 30727 5 46 45
C-E -31.7438 1.0688 -131.32 -161.995 66 3 5 6082 0 7 9
C-F -34.6415 4.9574 -84.1235 -113.8076 50 3 5 3871 0 0 7
C-G -10.0198 0.0 -31.0347 -41.0545 18 2 0 944 0 8 4
C-H -10.9141 1.5538 -10.945 -20.3053 11 1 0 358 0 0 7
D-E 0.0 0.0 -0.0487 -0.0487 3 0 0 19 0 2 0
D-F -4.8576 -22.2131 -58.9231 -85.9938 28 4 2 2375 2 5 2
D-G -12.3002 0.0 -10.6979 -22.9981 11 1 0 316 0 0 7
D-H 0.0 -3.2193 -0.6664 -3.8858 13 0 0 127 0 11 9
E-F -102.1326 -54.454 -747.862 -904.4486 158 23 44 31435 2 66 72
E-G 0.0 0.0 -0.5452 -0.5452 13 0 0 120 0 3 8
F-G 0.0 0.0 -0.315 -0.315 8 0 0 105 0 2 3
F-H -19.0794 -13.6791 -129.739 -162.4975 50 6 1 4789 1 19 27
G-H -116.9481 -58.4142 -730.092 -905.4543 172 28 48 30323 4 44 42