1LOJ

crystal structure of a methanobacterial sm-like archaeal protein (smap1) bound to uridine-5'-monophosphate (ump)

• Total interactions analyzed: 91
• Total true interactions: 38
• Strongest Interaction:
  • Chains: C-M
  • Int. Res.: 14
  • Norm. En. per Res.: -5.8824
• Hub Node: A(5)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-55.6281	-25.562	-233.392	-314.5821	83	21	8	9815	7	32	34
A-G	-86.1738	-1.602	-253.629	-341.4048	91	15	8	10734	5	36	32
A-H	-13.9408	-52.4618	-32.6381	-99.0407	22	15	0	1684	4	2	2
A-I	0.0	0.0	-1.813	-1.813	2	0	0	122	0	4	6
A-N	0.0	0.0	-0.0338	-0.0338	2	0	0	13	0	0	0
B-C	-62.1659	-21.9422	-225.625	-309.7331	82	18	8	9750	5	32	33
B-D	0.0	0.0	-0.0003	-0.0003	2	0	0	1	0	1	1
B-H	0.0	0.0	0.8118	0.8118	3	3	0	151	0	4	5
B-M	0.0	0.0	-0.0409	-0.0409	2	0	0	13	0	0	0
B-N	-11.7573	-48.5166	-18.8651	-79.139	17	3	0	974	4	2	2
C-D	-56.4984	-25.6976	-230.419	-312.615	80	20	8	9718	6	29	33
C-H	0.0	0.0	-0.0003	-0.0003	2	0	0	1	0	0	1
C-L	0.0	0.0	-0.0348	-0.0348	2	0	0	14	0	0	0
C-M	-16.1894	-52.4443	-13.7197	-82.3534	14	2	0	831	4	2	2
C-N	0.0	0.0	-1.7896	-1.7896	3	0	0	112	0	4	5
D-E	-40.1397	-24.9887	-213.552	-278.6804	82	13	9	10027	6	31	31
D-K	0.0	0.0	-0.0411	-0.0411	2	0	0	16	0	0	0
D-L	-16.382	-57.5317	-41.3001	-115.2139	20	2	0	1339	4	2	2
D-M	0.0	0.0	-2.9667	-2.9667	2	0	0	147	0	4	5
E-F	-62.1631	-36.1609	-229.733	-328.057	81	11	8	9659	6	32	31
E-J	0.0	0.0	-0.0325	-0.0325	2	0	0	12	0	0	0
E-K	-16.2159	-50.248	-29.7037	-96.1676	21	6	0	1262	3	2	2
E-L	0.0	0.0	-2.4844	-2.4844	2	1	0	123	0	4	4
F-G	-41.7584	-17.3129	-223.808	-282.8793	83	13	8	9862	5	32	33
F-I	0.0	0.0	-0.0378	-0.0378	2	0	0	14	0	0	0
F-J	-15.2199	-50.8254	-16.6203	-82.6657	18	9	0	1042	4	2	2
F-K	0.0	0.0	1.801	1.801	2	2	0	147	0	4	5
F-L	0.0	0.0	-0.0003	-0.0003	2	0	0	1	0	0	1
G-H	0.0	0.0	-0.0403	-0.0403	2	0	0	16	0	0	0
G-I	-8.022	-50.5751	-30.3042	-88.9013	19	2	0	1266	3	2	2
G-J	0.0	0.0	-3.0984	-3.0984	3	1	0	145	0	4	5
H-I	-62.6535	-32.7486	-236.485	-331.887	81	21	8	10047	8	31	30
H-N	-72.7573	-20.9156	-255.803	-349.4759	88	19	9	10732	8	39	35
I-J	-57.3631	-22.4099	-226.445	-306.2181	85	15	9	9729	6	34	34
J-K	-52.1863	-35.311	-224.085	-311.5823	80	8	8	9592	6	31	31
K-L	-65.295	-32.7152	-228.114	-326.1241	83	14	9	9733	6	32	31
L-M	-38.2404	-18.0209	-224.212	-280.4732	81	11	8	9478	5	31	32
M-N	-47.5476	-29.9965	-221.64	-299.1841	82	13	8	9415	7	31	31

Interface residues

• A-B: ALA17A, ALA54B, ARG13A, ARG34A, ARG34B, ARG37A, ARG64B, ARG65B, ARG72A, ARG72B, ARG81A, ASN10A, ASN20A, ASN23B, ASN48A, ASN48B, ASN52B, ASN75A, ASN75B, ASP16A, ASP33A, ASP44B, ASP59A, ASP74A, ASP74B, GLN12A, GLU35A, GLU56B, GLY19A, GLY19B, GLY32A, GLY32B, GLY60A, GLY67B, GLY73A, GLY73B, GLY82A, HIS46A, HIS46B, ILE27A, ILE28A, ILE71B, ILE76A, ILE76B, ILE79A, LEU15A, LEU15B, LEU18A, LEU18B, LEU22B, LEU30A, LEU30B, LEU40A, LEU40B, LEU45A, LEU45B, LEU49A, LEU49B, LEU51B, LEU57A, LEU66B, LEU70B, LYS29A, LYS31A, LYS31B, LYS41B, MET47A, MET47B, PHE36A, PHE36B, PHE43A, PHE43B, PRO14A, SER21A, SER42B, SER80A, THR63B, THR68B, TYR78A, VAL11A, VAL50B, VAL69B, VAL77A
• A-G: ALA17G, ALA54A, ARG13G, ARG34A, ARG34G, ARG37G, ARG64A, ARG65A, ARG72A, ARG72G, ARG81G, ASN10G, ASN20G, ASN23A, ASN48A, ASN48G, ASN52A, ASN75A, ASN75G, ASP16A, ASP16G, ASP33G, ASP44A, ASP44G, ASP53A, ASP59G, ASP74A, ASP74G, GLN12G, GLU35G, GLU55A, GLU56A, GLU58G, GLU61G, GLY19A, GLY19G, GLY32A, GLY32G, GLY60G, GLY67A, GLY73A, GLY73G, GLY82G, HIS46A, HIS46G, ILE27G, ILE28G, ILE71A, ILE76A, ILE76G, ILE79G, LEU15A, LEU15G, LEU18A, LEU18G, LEU22A, LEU30A, LEU30G, LEU40A, LEU40G, LEU45A, LEU45G, LEU49A, LEU49G, LEU51A, LEU57G, LEU66A, LEU70A, LEU84G, LYS29G, LYS31A, LYS31G, LYS41A, LYS83G, MET47A, MET47G, PHE36A, PHE36G, PHE43A, PHE43G, PRO14G, SER21G, SER42A, SER80G, THR68A, TYR78G, VAL11G, VAL26G, VAL50A, VAL69A, VAL77G
• A-H: ALA17A, ALA17H, ARG13A, ARG13H, ASN10A, ASN10H, ASN20A, ASN20H, ASP16A, ASP16H, GLN12A, GLN12H, GLY19H, LEU15A, LEU15H, LEU45A, LEU45H, PHE43A, PHE43H, VAL11A, VAL11H, VAL9A
• A-I: LEU45A, LEU45I
• A-N: ARG13A, ARG13N
• B-C: ALA17B, ALA54C, ARG13B, ARG34B, ARG34C, ARG37B, ARG64C, ARG65C, ARG72B, ARG72C, ARG81B, ASN20B, ASN23C, ASN48B, ASN48C, ASN52C, ASN75B, ASN75C, ASP16B, ASP16C, ASP33B, ASP44C, ASP53C, ASP59B, ASP74B, ASP74C, GLN12B, GLU35B, GLU56C, GLU58C, GLY19B, GLY19C, GLY32B, GLY60B, GLY67C, GLY73B, GLY73C, GLY82B, HIS46B, HIS46C, ILE27B, ILE28B, ILE71C, ILE76B, ILE76C, ILE79B, LEU15B, LEU15C, LEU18B, LEU18C, LEU22C, LEU30B, LEU30C, LEU40B, LEU40C, LEU45B, LEU45C, LEU49B, LEU49C, LEU51C, LEU57B, LEU66C, LEU70C, LYS29B, LYS31B, LYS31C, LYS41C, MET47B, MET47C, PHE36C, PHE43C, PRO14B, SER21B, SER42C, SER80B, THR63C, THR68C, TYR78B, VAL11B, VAL50C, VAL69C, VAL77B
• B-D: ARG72D, LYS31B
• B-H: LEU15B, LEU45B, LEU45H
• B-M: ARG13B, ARG13M
• B-N: ALA17B, ARG13B, ARG13N, ASN10N, ASN20B, ASP16B, ASP16N, GLN12B, GLN12N, LEU15B, LEU15N, LEU45B, LEU45N, PHE43B, PHE43N, VAL11B, VAL11N
• C-D: ALA17C, ALA54D, ARG13C, ARG34C, ARG34D, ARG37C, ARG64D, ARG65D, ARG72C, ARG72D, ARG81C, ASN23D, ASN48C, ASN48D, ASN75C, ASN75D, ASP16C, ASP33C, ASP44D, ASP74C, ASP74D, GLN12C, GLU35C, GLU56D, GLY19C, GLY19D, GLY32C, GLY32D, GLY60C, GLY67D, GLY73C, GLY73D, GLY82C, HIS46C, HIS46D, ILE27C, ILE28C, ILE71D, ILE76C, ILE76D, ILE79C, LEU15C, LEU15D, LEU18C, LEU18D, LEU22D, LEU30C, LEU30D, LEU40C, LEU40D, LEU45C, LEU45D, LEU49C, LEU49D, LEU51D, LEU57C, LEU66D, LEU70D, LYS29C, LYS31C, LYS31D, LYS41D, LYS83C, MET47C, MET47D, PHE36C, PHE36D, PHE43C, PHE43D, PRO14C, SER21C, SER42D, SER80C, THR63D, THR68D, TYR78C, VAL11C, VAL50D, VAL69D, VAL77C
• C-H: HIS46H, LEU45C
• C-L: ARG13C, ARG13L
• C-M: ARG13C, ARG13M, ASP16C, ASP16M, GLN12C, GLN12M, LEU15C, LEU15M, LEU45C, LEU45M, PHE43C, PHE43M, VAL11C, VAL11M
• C-N: ASP16C, LEU45C, LEU45N
• D-E: ALA17D, ALA54E, ARG13D, ARG34D, ARG34E, ARG37D, ARG64E, ARG65E, ARG72D, ARG72E, ARG81D, ASN10D, ASN20D, ASN23E, ASN48D, ASN48E, ASN52E, ASN75D, ASN75E, ASP16D, ASP33D, ASP44E, ASP59D, ASP74D, ASP74E, GLN12D, GLU35D, GLU56E, GLY19D, GLY19E, GLY32D, GLY32E, GLY60D, GLY67E, GLY73D, GLY73E, GLY82D, HIS46D, HIS46E, ILE27D, ILE28D, ILE71E, ILE76D, ILE76E, ILE79D, LEU15D, LEU15E, LEU18D, LEU18E, LEU22E, LEU30D, LEU30E, LEU40D, LEU40E, LEU45D, LEU45E, LEU49D, LEU49E, LEU51E, LEU57D, LEU66E, LEU70E, LYS29D, LYS31D, LYS31E, LYS41E, MET47D, MET47E, PHE36E, PHE43D, PHE43E, PRO14D, SER21D, SER42E, SER80D, THR63E, THR68E, TYR78D, VAL11D, VAL50E, VAL69E, VAL77D
• D-K: ARG13D, ARG13K
• D-L: ALA17D, ALA17L, ARG13D, ARG13L, ASN10D, ASN10L, ASN20D, ASN20L, ASP16D, ASP16L, GLN12D, GLN12L, LEU15D, LEU15L, LEU45D, LEU45L, PHE43D, PHE43L, VAL11D, VAL11L
• D-M: LEU45D, LEU45M
• E-F: ALA17E, ALA54F, ARG13E, ARG34E, ARG34F, ARG37E, ARG64F, ARG65F, ARG72E, ARG72F, ARG81E, ASN10E, ASN23F, ASN48E, ASN48F, ASN75E, ASN75F, ASP16E, ASP33E, ASP44E, ASP44F, ASP59E, ASP74E, ASP74F, GLN12E, GLU35E, GLU56F, GLY19E, GLY19F, GLY32E, GLY60E, GLY67F, GLY73E, GLY73F, GLY82E, HIS46E, HIS46F, ILE27E, ILE28E, ILE71F, ILE76E, ILE76F, ILE79E, LEU15E, LEU15F, LEU18E, LEU18F, LEU22F, LEU30E, LEU30F, LEU40E, LEU40F, LEU45E, LEU45F, LEU49E, LEU49F, LEU51F, LEU57E, LEU66F, LEU70F, LYS29E, LYS31E, LYS31F, LYS41F, MET47E, MET47F, PHE36E, PHE36F, PHE43E, PHE43F, PRO14E, SER21E, SER42F, SER80E, THR63F, THR68F, TYR78E, VAL11E, VAL50F, VAL69F, VAL77E
• E-J: ARG13E, ARG13J
• E-K: ALA17E, ALA17K, ARG13E, ARG13K, ASN10E, ASN10K, ASN20E, ASN20K, ASP16E, ASP16K, GLN12E, GLN12K, GLY19E, LEU15E, LEU15K, LEU45E, LEU45K, PHE43E, PHE43K, VAL11E, VAL11K
• E-L: LEU45E, LEU45L
• F-G: ALA17F, ALA54G, ARG13F, ARG34F, ARG34G, ARG37F, ARG64G, ARG65G, ARG72F, ARG72G, ARG81F, ASN10F, ASN23G, ASN48F, ASN48G, ASN52G, ASN75F, ASN75G, ASP16F, ASP33F, ASP44F, ASP44G, ASP53G, ASP74F, ASP74G, GLN12F, GLU35F, GLU56G, GLY19F, GLY19G, GLY32F, GLY32G, GLY60F, GLY67G, GLY73F, GLY73G, GLY82F, HIS46F, HIS46G, ILE27F, ILE28F, ILE71G, ILE76F, ILE76G, ILE79F, LEU15F, LEU15G, LEU18F, LEU18G, LEU22G, LEU30F, LEU30G, LEU40F, LEU40G, LEU45F, LEU45G, LEU49F, LEU49G, LEU51G, LEU57F, LEU66G, LEU70G, LYS29F, LYS31F, LYS31G, LYS41G, LYS83F, MET47F, MET47G, PHE36F, PHE36G, PHE43F, PHE43G, PRO14F, SER21F, SER42G, SER80F, THR68G, TYR78F, VAL11F, VAL50G, VAL69G, VAL77F
• F-I: ARG13F, ARG13I
• F-J: ALA17J, ARG13F, ARG13J, ASN10F, ASN20J, ASP16F, ASP16J, GLN12F, GLN12J, GLY19J, LEU15F, LEU15J, LEU45F, LEU45J, PHE43F, PHE43J, VAL11F, VAL11J
• F-K: LEU45F, LEU45K
• F-L: HIS46F, LEU45L
• G-H: ARG13G, ARG13H
• G-I: ALA17G, ARG13G, ARG13I, ASN10G, ASN10I, ASN20G, ASN20I, ASP16G, ASP16I, GLN12G, GLN12I, LEU15G, LEU15I, LEU45G, LEU45I, PHE43G, PHE43I, VAL11G, VAL11I
• G-J: ASP16G, LEU45G, LEU45J
• H-I: ALA17H, ALA54I, ARG13H, ARG34H, ARG34I, ARG37H, ARG64I, ARG65I, ARG72H, ARG72I, ARG81H, ASN20H, ASN23I, ASN48H, ASN48I, ASN52I, ASN75H, ASN75I, ASP16H, ASP33H, ASP44I, ASP53I, ASP74H, ASP74I, GLN12H, GLU35H, GLU56I, GLY19H, GLY19I, GLY32H, GLY32I, GLY60H, GLY67I, GLY73H, GLY73I, GLY82H, HIS46H, HIS46I, ILE27H, ILE28H, ILE71I, ILE76H, ILE76I, ILE79H, LEU15H, LEU15I, LEU18H, LEU18I, LEU22I, LEU30H, LEU30I, LEU40H, LEU40I, LEU45H, LEU45I, LEU49H, LEU49I, LEU51I, LEU57H, LEU66I, LEU70I, LYS29H, LYS31H, LYS31I, LYS41I, MET47H, MET47I, PHE36H, PHE36I, PHE43H, PHE43I, PRO14H, SER21H, SER42I, SER80H, THR68I, TYR78H, VAL11H, VAL50I, VAL69I, VAL77H
• H-N: ALA17N, ALA54H, ARG13N, ARG34H, ARG34N, ARG37N, ARG64H, ARG65H, ARG72H, ARG72N, ARG81N, ASN20N, ASN23H, ASN48H, ASN48N, ASN52H, ASN75H, ASN75N, ASP16H, ASP16N, ASP33N, ASP44H, ASP44N, ASP53H, ASP59N, ASP74H, ASP74N, GLN12N, GLU35N, GLU56H, GLU58H, GLY19H, GLY19N, GLY32H, GLY32N, GLY60N, GLY67H, GLY73H, GLY73N, GLY82N, HIS46H, HIS46N, ILE27N, ILE28N, ILE71H, ILE76H, ILE76N, ILE79N, LEU15H, LEU15N, LEU18H, LEU18N, LEU22H, LEU30H, LEU30N, LEU40H, LEU40N, LEU45H, LEU45N, LEU49H, LEU49N, LEU51H, LEU57N, LEU66H, LEU70H, LYS29N, LYS31H, LYS31N, LYS41H, LYS83N, MET47H, MET47N, PHE36H, PHE36N, PHE43H, PHE43N, PRO14N, SER21N, SER42H, SER80N, THR63H, THR68H, TYR78N, VAL11N, VAL26N, VAL50H, VAL69H, VAL77N
• I-J: ALA17I, ALA54J, ARG13I, ARG34J, ARG37I, ARG64J, ARG65J, ARG72I, ARG72J, ARG81I, ASN20I, ASN23J, ASN48I, ASN48J, ASN52J, ASN75I, ASN75J, ASP16I, ASP16J, ASP33I, ASP44I, ASP44J, ASP59I, ASP74I, ASP74J, GLN12I, GLU35I, GLU56J, GLU58J, GLY19I, GLY19J, GLY32I, GLY32J, GLY60I, GLY67J, GLY73I, GLY73J, GLY82I, HIS46I, HIS46J, ILE27I, ILE28I, ILE71J, ILE76I, ILE76J, ILE79I, LEU15I, LEU15J, LEU18I, LEU18J, LEU22J, LEU30I, LEU30J, LEU40I, LEU40J, LEU45I, LEU45J, LEU49I, LEU49J, LEU51J, LEU57I, LEU66J, LEU70J, LYS29I, LYS31I, LYS31J, LYS41J, LYS83I, MET47I, MET47J, PHE36I, PHE36J, PHE43I, PHE43J, PRO14I, SER21I, SER42J, SER80I, THR63J, THR68J, TYR78I, VAL11I, VAL50J, VAL69J, VAL77I
• J-K: ALA17J, ALA54K, ARG13J, ARG34J, ARG34K, ARG37J, ARG64K, ARG65K, ARG72J, ARG72K, ARG81J, ASN23K, ASN48J, ASN48K, ASN75J, ASN75K, ASP16J, ASP33J, ASP44J, ASP44K, ASP59J, ASP74J, ASP74K, GLN12J, GLU35J, GLU56K, GLY19J, GLY19K, GLY32J, GLY32K, GLY60J, GLY67K, GLY73J, GLY73K, GLY82J, HIS46J, HIS46K, ILE27J, ILE28J, ILE71K, ILE76J, ILE76K, ILE79J, LEU15J, LEU15K, LEU18J, LEU18K, LEU22K, LEU30J, LEU30K, LEU40J, LEU40K, LEU45J, LEU45K, LEU49J, LEU49K, LEU51K, LEU57J, LEU66K, LEU70K, LYS29J, LYS31J, LYS31K, LYS41K, LYS83J, MET47J, MET47K, PHE36K, PHE43J, PHE43K, PRO14J, SER21J, SER42K, SER80J, THR68K, TYR78J, VAL11J, VAL50K, VAL69K, VAL77J
• K-L: ALA17K, ALA54L, ARG13K, ARG34K, ARG34L, ARG37K, ARG64L, ARG65L, ARG72K, ARG72L, ARG81K, ASN10K, ASN20K, ASN23L, ASN48K, ASN48L, ASN75K, ASN75L, ASP16K, ASP16L, ASP33K, ASP44L, ASP59K, ASP74K, ASP74L, GLN12K, GLU35K, GLU56L, GLY19K, GLY19L, GLY32K, GLY32L, GLY60K, GLY67L, GLY73K, GLY73L, HIS46K, HIS46L, ILE27K, ILE28K, ILE71L, ILE76K, ILE76L, ILE79K, LEU15K, LEU15L, LEU18K, LEU18L, LEU22L, LEU30K, LEU30L, LEU40K, LEU40L, LEU45K, LEU45L, LEU49K, LEU49L, LEU51L, LEU57K, LEU66L, LEU70L, LYS29K, LYS31K, LYS31L, LYS41L, MET47K, MET47L, PHE36K, PHE36L, PHE43K, PHE43L, PRO14K, SER21K, SER42L, SER80K, THR63L, THR68L, TYR78K, VAL11K, VAL26K, VAL50L, VAL69L, VAL77K
• L-M: ALA17L, ALA54M, ARG13L, ARG34L, ARG34M, ARG37L, ARG64M, ARG65M, ARG72L, ARG72M, ARG81L, ASN20L, ASN23M, ASN48L, ASN48M, ASN52M, ASN75L, ASN75M, ASP16L, ASP33L, ASP44M, ASP74L, ASP74M, GLN12L, GLU35L, GLU56M, GLY19L, GLY19M, GLY32L, GLY32M, GLY60L, GLY67M, GLY73L, GLY73M, GLY82L, HIS46L, HIS46M, ILE27L, ILE28L, ILE71M, ILE76L, ILE76M, ILE79L, LEU15L, LEU15M, LEU18L, LEU18M, LEU22M, LEU30L, LEU30M, LEU40L, LEU40M, LEU45L, LEU45M, LEU49L, LEU49M, LEU51M, LEU57L, LEU66M, LEU70M, LYS29L, LYS31L, LYS31M, LYS41M, MET47L, MET47M, PHE36L, PHE36M, PHE43L, PHE43M, PRO14L, SER21L, SER42M, SER80L, THR63M, THR68M, TYR78L, VAL11L, VAL50M, VAL69M, VAL77L
• M-N: ALA17M, ALA54N, ARG13M, ARG34M, ARG34N, ARG37M, ARG64N, ARG65N, ARG72M, ARG72N, ARG81M, ASN20M, ASN23N, ASN48M, ASN48N, ASN75M, ASN75N, ASP16M, ASP16N, ASP33M, ASP44N, ASP59M, ASP74M, ASP74N, GLN12M, GLU35M, GLU56N, GLY19M, GLY19N, GLY32M, GLY32N, GLY60M, GLY67N, GLY73M, GLY73N, GLY82M, HIS46M, HIS46N, ILE27M, ILE28M, ILE71N, ILE76M, ILE76N, ILE79M, LEU15M, LEU15N, LEU18M, LEU18N, LEU22N, LEU30M, LEU30N, LEU40M, LEU40N, LEU45M, LEU45N, LEU49M, LEU49N, LEU51N, LEU57M, LEU66N, LEU70N, LYS29M, LYS31M, LYS31N, LYS41N, LYS83M, MET47M, MET47N, PHE36M, PHE36N, PHE43M, PHE43N, PRO14M, SER21M, SER42N, SER80M, THR68N, TYR78M, VAL11M, VAL50N, VAL69N, VAL77M