1LDP

crystal structure of murine mhc class i h-2ld with a mixture of bound peptides

• Total interactions analyzed: 6
• Total true interactions: 4
• Strongest Interaction:
  • Chains: H-P
  • Int. Res.: 75
  • Norm. En. per Res.: -3.1446
• Hub Node: H(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
H-L	-19.2785	-35.0946	-285.035	-339.4082	119	28	1	11625	2	34	36
H-P	-38.7517	0.0	-197.093	-235.8447	75	19	5	7309	0	0	0
H-Q	-41.6613	-1.7791	-159.091	-202.5314	84	74	6	11499	0	5	3
P-Q	-299.5405	0.0	3809.7	3510.1595	18	820	8	4974	0	0	0

Interface residues

• H-L: ALA117H, ALA11H, ALA125H, ALA236H, ARG111H, ARG12L, ARG14H, ARG194H, ARG202H, ARG21H, ARG234H, ARG35H, ARG6H, ARG97L, ASN24L, ASN30H, ASP119H, ASP122H, ASP238H, ASP37H, ASP53L, ASP59L, ASP85L, ASP96L, ASP98L, CYS121H, CYS25L, GLN115H, GLN242H, GLN29L, GLN2L, GLN48H, GLN6L, GLN87H, GLN8L, GLN96H, GLU114H, GLU229H, GLU232H, GLU32H, GLU9H, GLY120H, GLY207H, GLY237H, GLY239H, GLY26H, HIS13L, HIS188H, HIS191H, HIS192H, HIS31L, HIS34L, HIS67L, HIS93H, ILE124H, ILE1L, ILE22L, ILE23H, ILE64L, LEU17H, LEU206H, LEU65L, LEU95H, LYS186H, LYS243H, LYS3L, LYS58L, MET51L, MET54L, MET98H, MET99L, PHE116H, PHE241H, PHE56L, PHE62L, PHE74H, PHE8H, PRO14L, PRO15L, PRO193H, PRO235H, PRO32L, PRO33L, SER11L, SER13H, SER246H, SER24H, SER52L, SER55L, SER57L, SER61L, THR10H, THR190H, THR200H, THR233H, THR240H, THR28L, THR92H, THR94H, TRP204H, TRP244H, TRP60L, TRP95L, TRP97H, TYR10L, TYR113H, TYR118H, TYR123H, TYR26L, TYR27H, TYR63L, TYR7H, TYR85H, TYR99H, VAL12H, VAL231H, VAL25H, VAL27L, VAL9L
• H-P: ALA117H, ALA139H, ALA140H, ALA150H, ALA152H, ALA1P, ALA3P, ALA4P, ALA5P, ALA67H, ALA6P, ALA7P, ALA8P, ARG170H, ARG62H, ASN77H, ASP119H, ASP122H, CYS164H, GLN115H, GLN65H, GLN70H, GLN96H, GLU114H, GLU163H, GLU166H, GLU9H, GLY100H, GLY151H, GLY26H, GLY69H, ILE124H, ILE142H, ILE63H, ILE66H, LEU160H, LEU168H, LEU78H, LEU81H, LEU95H, LYS146H, MET52H, MET5H, MET9P, PHE116H, PHE33H, PHE36H, PHE74H, PRO2P, SER24H, THR143H, THR64H, THR80H, THR94H, TRP133H, TRP147H, TRP167H, TRP60H, TRP73H, TRP97H, TYR118H, TYR123H, TYR155H, TYR156H, TYR159H, TYR171H, TYR22H, TYR45H, TYR59H, TYR7H, TYR84H, TYR99H, VAL25H, VAL34H, VAL76H
• H-Q: ALA117H, ALA125H, ALA135H, ALA139H, ALA140H, ALA150H, ALA152H, ALA153H, ALA67H, ARG144H, ARG157H, ARG170H, ARG35H, ARG62H, ARG75H, ASN77H, ASP8Q, CYS164H, GLN115H, GLN149H, GLN1Q, GLN65H, GLN70H, GLN72H, GLN96H, GLU114H, GLU154H, GLU163H, GLU166H, GLU71H, GLU9H, GLY151H, GLY26H, GLY69H, ILE124H, ILE142H, ILE63H, ILE66H, LEU126H, LEU160H, LEU168H, LEU2Q, LEU78H, LEU81H, LEU95H, LEU9Q, LYS146H, LYS68H, MET52H, MET5H, PHE116H, PHE33H, PHE36H, PHE5Q, PHE74H, PHE7Q, PRO4Q, PRO6Q, SER24H, SER3Q, THR143H, THR64H, THR80H, TRP133H, TRP147H, TRP167H, TRP60H, TRP73H, TRP97H, TYR118H, TYR123H, TYR155H, TYR156H, TYR159H, TYR171H, TYR22H, TYR45H, TYR59H, TYR7H, TYR84H, TYR99H, VAL25H, VAL34H, VAL76H
• P-Q: ALA1P, ALA3P, ALA4P, ALA5P, ALA6P, ALA7P, ALA8P, ASP8Q, GLN1Q, LEU2Q, LEU9Q, MET9P, PHE5Q, PHE7Q, PRO2P, PRO4Q, PRO6Q, SER3Q