1LD9

the three-dimensional structure of an h-2ld peptide complex explains the unique interaction of ld with beta2m and peptide

• Total interactions analyzed: 15
• Total true interactions: 6
• Strongest Interaction:
  • Chains: D-F
  • Int. Res.: 87
  • Norm. En. per Res.: -3.5321
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-43.093	-58.9315	-280.798	-382.8225	125	39	1	12116	6	33	35
A-C	-5.6146	0.0	-289.916	-295.5306	87	38	4	10072	0	3	5
A-E	0.0	6.3881	715.16	721.5481	38	86	0	2380	0	15	8
B-D	0.0	-2.5763	-12.6398	-15.2161	28	11	0	1628	0	11	7
D-E	-32.8631	-58.9255	-279.742	-371.5306	124	37	1	12092	6	33	35
D-F	-19.6593	0.0	-287.632	-307.2913	87	34	4	10082	0	3	5

Interface residues

• A-B: ALA117A, ALA11A, ALA125A, ALA236A, ALA66B, ARG12B, ARG14A, ARG194A, ARG202A, ARG21A, ARG234A, ARG35A, ARG6A, ARG97B, ASN24B, ASP119A, ASP122A, ASP238A, ASP37A, ASP39A, ASP53B, ASP59B, ASP85B, ASP96B, ASP98B, CYS121A, CYS25B, GLN115A, GLN242A, GLN29B, GLN2B, GLN48A, GLN6B, GLN8B, GLN96A, GLU114A, GLU229A, GLU232A, GLU32A, GLU9A, GLY120A, GLY16A, GLY207A, GLY237A, GLY239A, GLY91A, HIS13B, HIS188A, HIS191A, HIS192A, HIS31B, HIS34B, HIS67B, HIS84B, HIS93A, ILE124A, ILE1B, ILE22B, ILE23A, ILE35B, ILE64B, ILE7B, LEU17A, LEU201A, LEU206A, LEU230A, LEU23B, LEU65B, LEU95A, LYS186A, LYS243A, LYS3B, LYS58B, MET51B, MET54B, MET98A, MET99B, PHE116A, PHE241A, PHE30B, PHE56B, PHE62B, PHE8A, PRO14B, PRO15A, PRO15B, PRO193A, PRO20A, PRO235A, PRO32B, PRO33B, SER11B, SER13A, SER246A, SER24A, SER52B, SER55B, SER57B, SER61B, THR10A, THR190A, THR200A, THR233A, THR240A, THR28B, THR92A, THR94A, TRP204A, TRP244A, TRP60B, TRP95B, TRP97A, TYR10B, TYR118A, TYR123A, TYR26B, TYR27A, TYR63B, TYR7A, TYR99A, VAL12A, VAL231A, VAL25A, VAL27B, VAL9B
• A-C: ALA117A, ALA125A, ALA139A, ALA140A, ALA150A, ALA152A, ALA153A, ALA158A, ALA67A, ARG144A, ARG170A, ARG62A, ARG6A, ARG75A, ARG79A, ASN3C, ASN5C, ASN77A, ASN8C, CYS101A, CYS164A, GLN115A, GLN65A, GLN70A, GLN72A, GLN96A, GLU114A, GLU154A, GLU163A, GLU166A, GLU55A, GLU58A, GLU61A, GLU71A, GLU9A, GLY100A, GLY151A, GLY26A, GLY69A, HIS7C, ILE124A, ILE142A, ILE63A, ILE66A, ILE6C, LEU160A, LEU168A, LEU78A, LEU81A, LEU95A, LYS146A, MET5A, PHE116A, PHE33A, PHE36A, PHE74A, PHE9C, PRO2C, SER24A, THR143A, THR64A, THR80A, TRP133A, TRP147A, TRP167A, TRP60A, TRP73A, TRP97A, TYR113A, TYR118A, TYR123A, TYR155A, TYR156A, TYR159A, TYR171A, TYR1C, TYR22A, TYR45A, TYR59A, TYR7A, TYR84A, TYR85A, TYR99A, VAL25A, VAL34A, VAL4C, VAL76A
• A-E: ALA177A, ALA49A, ARG181A, ASN176A, ASN17E, ASN21E, ASP183A, ASP238A, ASP76E, GLN54A, GLU16E, GLU53A, GLU69E, GLU74E, GLY175A, GLY18E, HIS13E, LEU179A, LEU180A, LYS19E, LYS31A, LYS41E, LYS44E, LYS48E, MET52A, PHE70E, PRO20E, PRO210A, PRO50A, PRO72E, THR178A, THR182A, THR71E, THR73E, THR75E, TRP51A, TYR209A, TYR78E
• B-D: ALA177D, ARG181D, ASN21B, ASP183D, GLN54D, GLU53D, GLU69B, GLY175D, GLY18B, GLY265D, LEU180D, LYS186D, LYS19B, LYS41B, LYS44B, LYS48B, PHE70B, PRO20B, PRO47B, PRO50D, PRO72B, SER184D, THR178D, THR182D, THR71B, THR73B, TRP51D, TYR209D
• D-E: ALA117D, ALA11D, ALA125D, ALA236D, ALA66E, ARG12E, ARG14D, ARG194D, ARG202D, ARG21D, ARG234D, ARG35D, ARG6D, ARG97E, ASN24E, ASP119D, ASP122D, ASP238D, ASP37D, ASP39D, ASP53E, ASP59E, ASP85E, ASP96E, ASP98E, CYS121D, CYS25E, GLN115D, GLN242D, GLN29E, GLN2E, GLN48D, GLN6E, GLN8E, GLN96D, GLU114D, GLU229D, GLU232D, GLU32D, GLU9D, GLY120D, GLY16D, GLY207D, GLY237D, GLY239D, GLY91D, HIS13E, HIS188D, HIS191D, HIS192D, HIS31E, HIS34E, HIS67E, HIS84E, HIS93D, ILE124D, ILE1E, ILE22E, ILE23D, ILE35E, ILE64E, ILE7E, LEU17D, LEU201D, LEU206D, LEU230D, LEU23E, LEU65E, LEU95D, LYS186D, LYS243D, LYS3E, LYS58E, MET51E, MET54E, MET98D, MET99E, PHE116D, PHE241D, PHE30E, PHE56E, PHE62E, PHE8D, PRO14E, PRO15D, PRO15E, PRO193D, PRO20D, PRO235D, PRO32E, PRO33E, SER11E, SER13D, SER24D, SER52E, SER55E, SER57E, SER61E, THR10D, THR190D, THR200D, THR233D, THR240D, THR28E, THR92D, THR94D, TRP204D, TRP244D, TRP60E, TRP95E, TRP97D, TYR10E, TYR118D, TYR123D, TYR26E, TYR27D, TYR63E, TYR7D, TYR99D, VAL12D, VAL231D, VAL25D, VAL27E, VAL9E
• D-F: ALA117D, ALA125D, ALA139D, ALA140D, ALA150D, ALA152D, ALA153D, ALA158D, ALA67D, ARG144D, ARG170D, ARG62D, ARG6D, ARG75D, ARG79D, ASN3F, ASN5F, ASN77D, ASN8F, CYS101D, CYS164D, GLN115D, GLN65D, GLN70D, GLN72D, GLN96D, GLU114D, GLU154D, GLU163D, GLU166D, GLU55D, GLU58D, GLU61D, GLU71D, GLU9D, GLY100D, GLY151D, GLY26D, GLY69D, HIS7F, ILE124D, ILE142D, ILE63D, ILE66D, ILE6F, LEU160D, LEU168D, LEU78D, LEU81D, LEU95D, LYS146D, MET5D, PHE116D, PHE33D, PHE36D, PHE74D, PHE9F, PRO2F, SER24D, THR143D, THR64D, THR80D, TRP133D, TRP147D, TRP167D, TRP60D, TRP73D, TRP97D, TYR113D, TYR118D, TYR123D, TYR155D, TYR156D, TYR159D, TYR171D, TYR1F, TYR22D, TYR45D, TYR59D, TYR7D, TYR84D, TYR85D, TYR99D, VAL25D, VAL34D, VAL4F, VAL76D