1LD4

placement of the structural proteins in sindbis virus

• Total interactions analyzed: 120
• Total true interactions: 10
• Strongest Interaction:
  • Chains: A-C
  • Int. Res.: 27
  • Norm. En. per Res.: -1.3684
• Hub Node: B(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-C	0.0	-17.7797	-19.1672	-36.9469	27	5	0	1348	1	9	4
B-C	0.0	0.0	-0.0624	-0.0624	5	0	0	14	0	3	0
B-D	0.0	0.0	-0.0624	-0.0624	5	0	0	14	0	3	0
C-D	0.0	0.0	-0.0624	-0.0624	5	0	0	14	0	3	0
E-F	0.0	0.0	-1.133	-1.133	30	0	0	365	0	0	0
G-H	0.0	0.0	-1.1518	-1.1518	30	0	0	367	0	0	0
I-J	0.0	0.0	-1.1336	-1.1336	30	0	0	365	0	0	0
K-L	0.0	0.0	-1.1422	-1.1422	30	0	0	359	0	0	0
M-N	-25.5034	1.992	435.376	411.8645	49	56	2	2540	0	8	8
M-O	0.0	8.4156	404.705	413.1206	22	44	1	1149	0	4	2

Interface residues

• A-C: ALA1234A, ALA1241A, ALA5177C, ARG1202A, ARG1239A, ARG5174C, ASN5172C, ASP1235A, GLN5168C, GLU1186A, GLU1236A, GLU1259A, GLU5176C, GLY1200A, GLY1237A, GLY1260A, LEU5169C, MET5173C, PRO1258A, PRO5170C, SER1199A, SER5175C, THR1204A, THR1238A, THR1261A, THR5179C, VAL5171C
• B-C: ASP4122B, GLU4121B, LYS5153C, PRO5149C, VAL5150C
• B-D: ASP6122D, GLU6121D, LYS4153B, PRO4149B, VAL4150B
• C-D: ASP5122C, GLU5121C, LYS6153D, PRO6149D, VAL6150D
• E-F: ASN1164E, ASN1264F, GLU1154E, GLU1168E, GLU1170E, GLU1254F, GLU1268F, GLU1270F, LEU1153E, LEU1160E, LEU1161E, LEU1167E, LEU1174E, LEU1253F, LEU1260F, LEU1261F, LEU1267F, LEU1274F, LYS1156E, LYS1163E, LYS1175E, LYS1256F, LYS1263F, LYS1275F, MET1150E, MET1250F, VAL1157E, VAL1171E, VAL1257F, VAL1271F
• G-H: ASN4164G, ASN4264H, GLU4154G, GLU4168G, GLU4170G, GLU4254H, GLU4268H, GLU4270H, LEU4153G, LEU4160G, LEU4161G, LEU4167G, LEU4174G, LEU4253H, LEU4260H, LEU4261H, LEU4267H, LEU4274H, LYS4156G, LYS4163G, LYS4175G, LYS4256H, LYS4263H, LYS4275H, MET4150G, MET4250H, VAL4157G, VAL4171G, VAL4257H, VAL4271H
• I-J: ASN5164I, ASN5264J, GLU5154I, GLU5168I, GLU5170I, GLU5254J, GLU5268J, GLU5270J, LEU5153I, LEU5160I, LEU5161I, LEU5167I, LEU5174I, LEU5253J, LEU5260J, LEU5261J, LEU5267J, LEU5274J, LYS5156I, LYS5163I, LYS5175I, LYS5256J, LYS5263J, LYS5275J, MET5150I, MET5250J, VAL5157I, VAL5171I, VAL5257J, VAL5271J
• K-L: ASN6164K, ASN6264L, GLU6154K, GLU6168K, GLU6170K, GLU6254L, GLU6268L, GLU6270L, LEU6153K, LEU6160K, LEU6161K, LEU6167K, LEU6174K, LEU6253L, LEU6260L, LEU6261L, LEU6267L, LEU6274L, LYS6156K, LYS6163K, LYS6175K, LYS6256L, LYS6263L, LYS6275L, MET6150K, MET6250L, VAL6157K, VAL6171K, VAL6257L, VAL6271L
• M-N: ALA1194M, ALA4194N, ARG1220M, ARG4220N, ASN1043M, ASN1149M, ASN4043N, ASN4149N, GLU1191M, GLU4191N, GLY1150M, GLY1193M, GLY4150N, GLY4193N, HIS1125M, HIS4125N, ILE1162M, ILE4162N, LYS1123M, LYS1160M, LYS1176M, LYS1196M, LYS4123N, LYS4160N, LYS4176N, LYS4196N, MET1195M, MET4195N, PRO1153M, PRO1165M, PRO1190M, PRO4153N, PRO4165N, PRO4190N, SER1041M, SER4041N, THR1042M, THR1126M, THR1152M, THR4042N, THR4126N, THR4152N, TYR1147M, TYR1192M, TYR4192N, VAL1148M, VAL1151M, VAL4148N, VAL4151N
• M-O: ALA1022M, ALA1293M, ASP1292M, ASP1323M, CYS5306O, GLN5340O, GLU5305O, GLY1023M, HIS5355O, LEU1295M, MET5315O, PRO1294M, SER1291M, SER1297M, SER1322M, SER5304O, SER5357O, THR1290M, THR5307O, TYR1024M, TYR5308O, VAL1296M