1LB2

structure of the e. coli alpha c-terminal domain of rna polymerase in complex with cap and dna

• Total interactions analyzed: 10
• Total true interactions: 2
• Strongest Interaction:
  • Chains: A-B
  • Int. Res.: 35
  • Norm. En. per Res.: -3.0479
• Hub Node: A(1)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-17.5206	11.5998	-100.754	-106.6748	35	12	0	3608	0	12	11
B-E	-13.4366	-2.9168	-32.0672	-48.4207	28	1	0	1646	0	6	13

Interface residues

• A-B: ALA156A, ARG209A, ARG284B, ARG317B, ASP155A, ASP161A, GLN164A, GLN283B, GLU286B, GLU288B, GLY162A, GLY207A, GLY315B, HIS159A, LEU289B, LEU290B, LEU300B, LEU314B, LYS166A, LYS291B, LYS297B, LYS304B, MET157A, MET163A, MET316B, PRO154A, PRO160A, SER313B, THR158A, THR202A, THR208A, THR285B, VAL204A, VAL282B, VAL287B
• B-E: ARG265E, ASN294B, ASP305E, CYS269B, GLU273B, GLU288B, GLU302E, GLY296B, ILE303E, LEU262E, LEU289B, LEU290B, LEU295B, LEU300B, LYS291B, LYS297B, LYS297E, LYS298E, LYS304E, PRO293B, SER266E, SER299E, THR263E, THR292B, THR301E, VAL264E, VAL287B, VAL306E