1L6L
structures of apolipoprotein a-ii and a lipid surrogate complex provide insights into apolipoprotein-lipid interactions
Total interactions analyzed 496
Total true interactions 152
Strongest Interaction Chains E-G
Int. Res. 17
Norm. En. per Res. -7.6333
Hub Node C(10)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -16.7706 -18.5408 666.955 631.6436 103 17 3 7491 2 21 32
A-C -23.795 0.0 -37.7332 -61.5282 20 12 2 2181 0 1 2
A-D 0.0 0.0 -1.7636 -1.7636 11 0 0 200 0 0 0
A-I 0.0 0.0 -1.9905 -1.9905 27 0 0 242 0 7 7
A-J 0.0 13.2887 -92.6232 -79.3345 76 5 1 4317 0 9 10
A-L 0.0 0.0 -3.0209 -3.0209 7 0 0 260 0 0 0
A-P 0.0 0.0 -1.7734 -1.7734 7 0 0 208 0 0 0
B-C 0.0 1.1249 -19.9287 -18.8038 14 0 0 697 0 1 2
B-D -21.3125 2.1599 -35.6231 -54.7758 18 8 0 1216 0 1 2
B-I 0.0 24.0776 -192.211 -168.1334 104 25 5 8736 1 16 19
B-J 0.0 0.0 -12.8661 -12.8661 32 1 0 574 0 2 3
B-K -8.0629 0.0 -7.765 -15.828 5 0 0 295 0 0 0
B-L 0.0 0.0 -0.0035 -0.0035 3 0 0 5 0 0 0
B-W 0.0 0.0 -0.0003 -0.0003 2 0 0 1 0 0 0
B-Y 0.0 -1.851 -1.6119 -3.4629 12 0 0 221 0 2 2
C-D -8.6151 -7.5774 642.972 626.7795 90 13 1 6344 2 20 29
C-E -20.5842 0.0 -82.628 -103.2122 21 14 2 2920 0 0 1
C-F 0.0 0.0 -1.0897 -1.0897 6 0 0 117 0 0 0
C-H 0.0 0.0 -3.5734 -3.5734 10 0 0 249 0 1 1
C-I 0.0 0.0 -0.0161 -0.0161 2 0 0 2 0 0 0
C-J -31.7791 0.0 -58.2235 -90.0026 15 25 0 2470 0 0 0
C-K 0.0 29.7079 -32.0459 -2.338 37 3 0 1502 0 4 6
C-L -7.4968 15.8783 -150.645 -142.2634 111 5 8 7470 0 19 22
C-N 0.0 0.0 -0.2533 -0.2533 4 0 0 19 0 0 0
C-P 0.0 0.0 -0.0003 -0.0003 2 0 0 1 0 0 0
D-E 0.0 0.0 -0.0056 -0.0056 5 0 0 3 0 0 1
D-F -11.973 8.8498 -123.41 -126.5332 23 16 0 3327 0 1 1
D-I -10.9933 0.0 -10.5438 -21.5371 7 0 0 326 0 0 0
D-J 0.0 0.0 -1.0079 -1.0079 6 0 0 150 0 0 0
D-K -16.2982 45.6386 -144.814 -115.4736 105 34 10 7862 1 15 15
D-L 0.0 0.0 -19.1575 -19.1575 34 1 0 952 0 4 6
D-M 0.0 0.0 -18.542 -18.542 13 2 2 764 0 0 0
D-N 0.0 0.0 -0.0147 -0.0147 2 0 0 9 0 0 0
D-W 0.0 0.0 -0.4104 -0.4104 7 0 0 64 0 0 3
E-F -11.0398 -17.3371 610.522 582.1451 100 17 1 7533 3 26 29
E-G -33.2307 0.0 -96.5359 -129.7666 17 12 1 2601 0 1 1
E-H 0.0 0.0 -3.556 -3.556 9 0 1 375 0 0 0
E-K 0.0 0.0 -2.2511 -2.2511 6 0 0 116 0 0 0
E-L 0.0 0.0 -7.8126 -7.8126 9 0 1 535 0 0 0
E-M 0.0 13.0351 -31.8067 -18.7716 37 8 0 1509 0 8 8
E-N -20.3116 6.2769 -331.643 -345.6778 134 32 13 14319 2 31 30
E-P 0.0 0.0 -15.9613 -15.9613 7 1 0 646 0 0 0
E-Q 0.0 0.0 -0.0008 -0.0008 2 0 0 2 0 0 0
F-H -41.5449 0.0 -64.2662 -105.8111 18 10 0 2106 0 1 2
F-J -16.6614 21.6601 -129.567 -124.5683 63 10 2 5621 2 16 15
F-K 0.0 0.0 -2.6046 -2.6046 6 0 0 313 0 1 0
F-L 0.0 0.0 -0.3128 -0.3128 2 0 0 53 0 0 0
F-M -21.8827 5.398 -123.812 -140.2967 91 6 1 6224 3 15 19
F-N -4.589 0.0 -22.0655 -26.6545 39 0 0 947 0 5 7
F-P 0.0 0.0 -0.4307 -0.4307 4 0 0 73 0 0 0
G-H -6.3932 -23.0113 588.851 559.4465 112 13 3 7662 2 21 33
G-M 0.0 0.0 -4.469 -4.469 9 0 0 348 0 0 0
G-N 0.0 0.0 -36.9262 -36.9262 16 4 0 1470 0 0 0
G-P 0.0 4.9347 -11.1038 -6.1691 34 0 0 758 0 4 6
G-Q -4.4844 18.8875 -145.636 -131.2329 85 1 2 6553 1 10 15
H-J 0.0 0.0 -0.0154 -0.0154 2 0 0 3 0 0 0
H-L 0.0 0.0 -1.0139 -1.0139 12 0 0 131 0 0 0
H-M -3.517 0.0 -52.9216 -56.4386 11 10 1 1615 0 0 0
H-P -3.1019 -1.4452 -86.1154 -90.6625 88 5 3 4864 2 9 13
H-Q 0.0 19.8028 -6.3407 13.4621 27 0 0 582 0 4 6
I-J -6.4446 7.9474 612.76 614.2628 99 19 1 7201 1 22 32
I-K -13.8614 0.0 -1.6267 -15.4881 5 8 0 406 0 0 0
I-M 0.0 0.0 -0.003 -0.003 2 0 0 1 0 0 1
I-W 0.0 0.0 -2.2488 -2.2488 6 0 0 212 0 0 0
J-K 0.0 0.0 -0.3638 -0.3638 3 0 0 51 0 0 0
J-L -5.8508 0.0 -17.6195 -23.4703 7 1 0 597 0 0 0
J-M -6.423 -13.1789 -35.7874 -55.3893 36 5 0 1910 1 11 13
J-P 0.0 0.0 -0.0055 -0.0055 3 0 0 5 0 1 1
K-L -2.4986 -1.5883 601.283 597.196 112 12 1 8083 0 20 30
K-M -8.7812 0.0 -7.2995 -16.0807 9 3 0 530 0 0 0
K-W 0.0 0.0 -1.9693 -1.9693 20 0 0 357 0 5 3
K-6 0.0 0.0 -0.9265 -0.9265 11 0 0 182 0 3 2
L-M 0.0 0.0 -0.007 -0.007 3 0 0 5 0 0 0
L-N -11.663 0.0 -23.2943 -34.9573 6 3 0 633 0 0 0
L-P -9.0688 -12.4911 -1.3442 -22.9041 15 1 0 145 1 6 8
M-N -4.7703 -14.2632 637.998 618.9645 108 15 1 6828 2 23 30
M-P -30.0494 0.0 -15.8493 -45.8987 8 5 0 574 0 0 0
N-P 0.0 0.0 -2.2835 -2.2835 5 0 0 172 0 0 0
N-Q -6.4376 0.0 -15.5985 -22.0361 8 1 0 482 0 0 0
P-Q 0.0 10.3894 638.42 648.8094 103 9 1 6651 0 24 30
S-T -18.0658 -23.0899 615.363 574.2074 106 8 2 7519 2 22 32
S-U -30.458 0.0 -115.597 -146.055 22 11 0 3233 0 1 2
S-V 0.0 0.0 -21.9709 -21.9709 17 1 1 1173 0 0 0
S-1 0.0 0.0 -1.4331 -1.4331 30 0 0 258 0 6 7
S-2 0.0 7.4189 -47.3297 -39.9108 68 2 0 2901 0 8 10
S-3 0.0 0.0 -0.0019 -0.0019 2 0 0 1 0 0 0
S-4 0.0 0.0 -2.4601 -2.4601 9 0 0 258 0 0 0
T-U 0.0 0.0 -4.5686 -4.5686 8 0 0 151 0 0 2
T-V -37.6061 4.5792 138.918 105.8911 17 42 0 1780 0 1 2
T-1 0.0 21.0987 -182.42 -161.3213 105 7 9 9036 1 17 20
T-2 0.0 0.0 -7.6176 -7.6176 26 0 0 510 0 2 3
T-3 0.0 0.0 -8.8544 -8.8544 5 0 0 508 0 0 0
T-4 0.0 0.0 -0.7741 -0.7741 5 0 0 103 0 0 0
U-V -7.7482 -6.0292 663.878 650.1006 94 10 3 5903 2 19 26
U-W -6.1407 0.0 -49.7857 -55.9264 19 12 1 2198 0 0 1
U-X 0.0 0.0 -0.696 -0.696 8 0 0 153 0 0 0
U-Z 0.0 0.0 -6.399 -6.399 13 0 0 342 0 2 2
U-2 0.0 0.0 -10.8898 -10.8898 9 0 0 484 0 1 1
U-3 0.0 31.9202 -24.792 7.1282 31 0 0 1124 0 2 4
U-4 -6.7314 13.1333 -162.08 -155.6781 111 4 10 8124 0 17 19
U-7 0.0 0.0 -0.0031 -0.0031 2 0 0 3 0 0 0
V-W 0.0 0.0 -13.9572 -13.9572 9 0 0 539 0 0 2
V-X -7.0959 2.1977 -98.9003 -103.7985 23 12 1 3657 0 1 1
V-1 0.0 0.0 -0.0929 -0.0929 6 0 0 35 0 0 0
V-2 0.0 0.0 -0.0025 -0.0025 3 0 0 7 0 0 0
V-3 0.0 11.2647 -140.319 -129.0543 100 4 9 6809 1 15 14
V-4 0.0 0.0 -10.7937 -10.7937 38 4 0 814 0 4 6
V-5 0.0 0.0 -10.4077 -10.4077 10 0 1 526 0 0 0
V-6 0.0 0.0 -0.0085 -0.0085 3 0 0 7 0 0 0
W-X -6.0697 -18.1958 593.943 569.6775 109 11 2 7965 2 26 31
W-Y -13.3866 0.0 -113.693 -127.0796 17 8 1 2722 0 1 1
W-Z 0.0 0.0 -2.5004 -2.5004 10 0 0 385 0 0 0
W-4 0.0 0.0 -17.9429 -17.9429 11 0 0 880 0 0 0
W-5 0.0 11.9222 -9.2546 2.6677 37 0 0 754 0 8 7
W-6 -24.4876 9.3055 -284.466 -299.6481 130 10 10 12483 2 33 30
W-7 0.0 0.0 -16.8206 -16.8206 8 1 0 739 0 0 0
W-8 0.0 0.0 -0.0613 -0.0613 2 0 0 21 0 0 0
X-Y 0.0 0.0 -0.3668 -0.3668 4 0 0 35 0 0 1
X-Z -18.3349 0.0 -61.8544 -80.1893 18 8 0 2182 0 1 1
X-2 -17.7596 22.079 -134.788 -130.4687 63 10 2 5663 2 15 14
X-3 0.0 0.0 -0.404 -0.404 3 0 0 77 0 1 0
X-5 -15.7922 10.4914 -124.643 -129.9437 90 3 1 6191 4 15 18
X-6 -4.4211 0.0 -17.6967 -22.1178 32 0 0 707 0 6 6
X-7 0.0 0.0 -2.9288 -2.9288 7 0 0 216 0 0 0
Y-Z -2.9663 -18.816 601.944 580.1617 108 15 3 7730 2 23 32
Y-5 0.0 0.0 -0.0018 -0.0018 2 0 0 2 0 0 0
Y-6 0.0 0.0 -17.6804 -17.6804 10 3 0 1031 0 1 0
Y-7 0.0 4.983 -13.5782 -8.5952 29 0 0 770 0 3 5
Y-8 -6.1689 10.9305 -93.765 -89.0034 81 2 0 4241 0 11 13
Z-2 0.0 0.0 -0.0006 -0.0006 2 0 0 2 0 0 0
Z-4 0.0 0.0 -1.4773 -1.4773 11 0 0 188 0 0 0
Z-5 0.0 0.0 -12.8575 -12.8575 6 0 0 588 0 0 0
Z-7 0.0 0.0 -55.0871 -55.0871 75 0 3 3658 0 8 11
Z-8 0.0 6.7004 -3.6739 3.0265 28 0 0 331 0 4 6
1-2 -4.7212 7.8196 631.936 635.0344 94 12 1 6563 2 22 29
1-3 -10.1556 0.0 -12.4505 -22.6061 8 4 0 526 0 0 0
1-5 0.0 0.0 -0.0546 -0.0546 2 0 0 11 0 0 1
2-3 0.0 0.0 -2.5002 -2.5002 5 0 0 152 0 0 0
2-4 0.0 0.0 -15.9817 -15.9817 8 14 0 741 0 0 0
2-5 -7.0103 -12.0773 -15.5904 -34.678 34 1 0 993 1 9 10
2-7 0.0 0.0 -0.0164 -0.0164 5 0 0 16 0 1 0
3-4 0.0 5.0252 590.875 595.9002 105 22 2 7586 0 23 28
3-5 -26.4054 0.0 -34.5606 -60.966 10 7 0 867 0 0 0
3-6 0.0 0.0 -0.1425 -0.1425 6 0 0 58 0 0 0
4-5 0.0 0.0 -0.0014 -0.0014 2 0 0 1 0 0 0
4-6 -6.4424 0.0 -29.7858 -36.2282 9 10 0 781 0 0 0
4-7 0.0 0.0 -0.0218 -0.0218 8 0 0 9 0 2 3
5-6 0.0 13.9106 626.57 640.4806 94 18 2 6497 0 22 25
5-7 -19.4978 0.0 -25.5919 -45.0897 7 2 0 643 0 0 0
6-7 -9.0389 0.0 -18.9058 -27.9447 13 1 0 785 0 0 0
6-8 -3.0358 0.0 -22.4485 -25.4843 7 2 0 480 0 0 0
7-8 0.0 10.1999 666.037 676.2369 88 9 2 4719 1 18 25