AlphaDist - C-Alpha-Distance

Atm2Seq - Converts PDB format file into a PIR formatted sequence file

CoilCheck - Predicts existence and location of potential coiled-coil domains in proteins

Predict CoiledCoil - Predicting coiled-coil from sequence input

DDMatrix - Generate Distance Matrix Plot for two PDBs

IMOT - Identifying conserved spatially interacting regions across proteins

Joy - A set of tools for protein sequence-structure representation and analysis

Joy-HBOND - Tool to locate possible hydrogen bonds in a protein structure

Joy-SSTRUC - Tool for identifying torsions and secondary structure for a protein

Modeller - Models three-dimensional structures of proteins and their assemblies by satisfaction of spatial restraints

Modip - Modelling of Disulphide bonds in proteins

CAPSEcal - Various energy calculations

GenThreader - Fold Recognition

PSIPRED - protein secondary structure prediction

Super - Calculate RMS Deviation between 2 structures

RANMOD - Random Conformation to Polypeptide Backbone