CAPSBlast - Sequence search against databases from CAPS

CoilCheck - Predicts existence and location of potential coiled-coil domains in proteins

Predict CoiledCoil - Predicting coiled-coil from sequence input

DISOPRED - Protein Disorder Prediction

FMALIGN - Multiple alignment of protein sequences

IMOT - Identifying conserved spatially interacting regions across proteins

Joy - A set of tools for protein sequence-structure representation and analysis

MegaCC - MOLECULAR EVOLUTIONARY GENETICS ANALYSIS

Modeller - Models three-dimensional structures of proteins and their assemblies by satisfaction of spatial restraints

Modip - Modelling of Disulphide bonds in proteins

MOTIFS Homologous - Identifies Motifs on a sequence using homologous

MOTIFS - Identify Motifs from a set of sequence or alignment

GenThreader - Fold Recognition

Phylip-Consense - Consensus tree program from Phylip

Phylip-Kitsch - Fitch: Margoliash and Least Squares Methods with Evolutionary Clock

Phylip-Neighbor - Neighbor: Joining and UPGMA methods

Phylip-Proml - Protein Maximum Likelihood program

Phylip-Promlk - Protein maximum likelihood program with molecular clock

Phylip-Protdist - Program to compute distance matrix from protein sequences

Phylip-Protpars - Protein Sequence Parsimony Method

Phylip-Seqboot - a general bootstrapping and data set translation tool

PURE - Prediction of Unassigned REgions