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3DSwap - Database of Domain Swapping in Proteins:

3DSwap is a comprehensive collection of protein structures that are reported to be involved in 3-Dimensional Domain Swapping.


Methodology:

Detailed Methodology will be available.


Database Contents:
  1. Details will be available soon


References:
  • Liu Y., Eisenberg D. 3D domain swapping: as domains continue to swap. Protein Sci. 2002;11:1285–1299.
    Mizuguchi K., Deane C.M., Blundell T.L., Johnson M.S., Overington J.P. JOY: protein sequence-structure representation and analysis. Bioinformatics. 1998;14:617–623.
  • Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W., Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997;25:3389–3402.
  • G. Pugalenthi, G. Archunan and R. Sowdhamini, DIAL: a web-based server for the automatic identification of structural domains in proteins. Nucleic Acids Res. 2005 July 1; 33(Web Server issue): W130–W132.

3DSwap Database Team :

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
K. Shameer
Sai Sudha, Poornima