PASS2
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Superfamily Details

Superfamily summary
Superfamily Name:  Family A G protein-coupled receptor-like
Class Name:  Membrane and cell surface proteins and peptides
Fold Name:  Family A G protein-coupled receptor-like
Number of Members:  5
Average Size: 
Members
SCOP ID Name Source
d1m0ka- Bacteriorhodopsin Archaeon Halobacterium salinarum [TaxId: 2242]
d1e12a- Halorhodopsin Archaeon Halobacterium salinarum [TaxId: 2242]
d1h2sa- Sensory rhodopsin II Archaeon Natronobacterium pharaonis [TaxId: 2257]
d1xioa- Sensory rhodopsin Anabaena sp. PCC 7120 [TaxId: 103690]
d1u19a- Rhodopsin Cow (Bos taurus) [TaxId: 9913]

Alignment Based On Similarities In Structural Features using Comparer

                             10        20        30        40        50  
d1e12a-  (  24 )                                      renallssSLwvNval
d1h2sa-  (   1 )                                        mvglttlFwlGAig
d1m0ka-  (   5 )                                       tgrpEwiwLalGtal
d1u19a-  (   1 )    mnGtegpnfyVPfsnktgvVrsPFeapQyyLaepwqFsmlAayMflLiml
d1xioa-  (   1 )                                      m--nlesllHwiYvag
                                                           aaaaaaaaaaa

                             60        70        80        90        100 
d1e12a-  (  40 )    AgiailvFvymGrtIrp--grPrlIwgATlmIPlvSis-sYlgLlsgltV
d1h2sa-  (  15 )    MlvGtlaFawaGrda-g--sgerryyvtLvgISgiAAv-aYvvMAlgvgw
d1m0ka-  (  20 )    MglgtlyFlvkgmgvsd--pdAkkFyaiTtlVPaiAft-mYlsMllgyGl
d1u19a-  (  51 )    GfpiNflTlyVTvqHkkLrtplNyILlnLAvADlfMVfgGFtTTlyTSl-
d1xioa-  (  15 )    MtigalhFwslSrnpr---gVpqyEYlvAmfIPiwSgl-aYmamAi----
                    aaaaaaaaaaa           aaaaaaaaaaaaaaaa aaaaaa     

                             110       120       130       140       150 
d1e12a-  (  87 )    gmieMpagHalagemvrSQwGRYltwalStpmILlALGlLAd----Vd--
d1h2sa-  (  61 )    vpva----------ertVFapRYiDwilTtplIVyFLGlLAg----Ld--
d1m0ka-  (  67 )    tmVpfg------geqnpIYwARYaDwlfTtplLLlDLAlLVd----ad--
d1u19a-  ( 100 )    -hGyFvfgptGÇ-------nlEGffatLGgeIaLWSLvvLaieRyvvVck
d1xioa-  (  57 )    ---------------diahyaRYiDwmvTtPlLLlSLSWTAMqfikkd--
                                       aaaaaaaaaaaaaaaaaaaaaa         

                             160       170       180       190       200 
d1e12a-  ( 131 )    --------lgslftViaaDigmCvtglaAAmtts----------------
d1h2sa-  (  95 )    --------srefgiVitlNtvvmlAgfaGAmv-p----------------
d1m0ka-  ( 105 )    --------qgtilaLvgaDgimigtglvGAlt-k----------------
d1u19a-  ( 142 )    pmsnfrfgenhaimgvafTwvmAlaCAapPlvgwSrYIPEGMQCSÇgIDY
d1xioa-  (  99 )    --------wtlIgfLmstQivvitSgliAdls-e----------------
                            aaaaaaaaaaaaaaaaaaaaaaa                   

                             210       220       230       240       250 
d1e12a-  ( 157 )    ----allfRwafyaiscaf-fvvVlsaLvtdWaasAs-------------
d1h2sa-  ( 120 )    ----g-ieryalfgmgava-flgLvyyLvgpMtesAs-------------
d1m0ka-  ( 130 )    ----vysyRfvwwaistaa-mlyIlyvLffgf------------------
d1u19a-  ( 192 )    YTpheetnNesFViymfvvHfiiPlivIffcygqLvftvkeaaaqqqesa
d1xioa-  ( 124 )    ----rdwvrylwyicgvca-fliIlwGIwnpLrakTr-------------
                           aaaaaaaaaaaa aaaaaaaaa aa                  

                             260       270       280       290       300 
d1e12a-  ( 189 )    ---sag--TaeiFdtLrvlTvvlWlgypivwavgVEGlAlvqsvGatSwa
d1h2sa-  ( 151 )    ---qrssgiksLYvrLrnlTvilwaiypfiwllGPPGvall-tptvDVal
d1m0ka-  ( 162 )    ---smrpevastFkvLrnvTvvlWsaypvvwliGsEGagiv-plniETll
d1u19a-  ( 242 )    ttqkaekevTrMviiMviaFliCwlpyagvAfyIfthqgsdfgpifMTip
d1xioa-  ( 156 )    ---tqsseLanlYdkLVtyFtvlWigypivwiiGpsGfgwi-nqtiDTfl
                          aaaaaaaaaaaaaaaaaaaaaaaaaaa          aaaaaaa

                             310       320       330       340       350 
d1e12a-  ( 234 )    YSvlDvfAKyvFAfiLLrwVannertVAv                     
d1h2sa-  ( 197 )    IvylDlvTKvgFGfialdaaatlraehge                     
d1m0ka-  ( 208 )    FMvlDvsAKvgFGliLLrs-rAIfg                         
d1u19a-  ( 292 )    AFfAKt-SAvyNPviYimmnkqFrnCmvttlccgknplgddeasttVskt
d1xioa-  ( 202 )    FCllPffSKvgFSflDLhgLrnlnd                         
                    aaaaaaaa aaaaaaaaa  aa                            

                            
d1e12a-                     
d1h2sa-                     
d1m0ka-                     
d1u19a-  ( 341 )    etsqvapa
d1xioa-                     
                            

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla ç
positive phi: italic x

Jmol view

Jmol Model View
Jmol Command prompt
Response Logs

Tree based on RMSD between structures

Matrices

1. Percentage Identity Matrix  [View | Download]
2. Distance Matrix  [View | Download]

PCA based on sequence identity

1. PCA  [View]
2. Plot file  [Download]

CUSP Results

CUSP Result   [View | Download]

Alistat - Alignment Statistics

Alignment Statistics  [Download]

SMotif - Conserved Structural Motifs

SMotif Result   [View | Download]

MeanRMS

MeanRMS  [Download]