PASS2
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Superfamily Details

Superfamily summary
Superfamily Name:  Integrin domains
Class Name:  All beta proteins
Fold Name:  Immunoglobulin-like beta-sandwich
Number of Members:  4
Average Size: 
Members
SCOP ID Name Source
d1jv2a1 Thigh, calf-1 and calf-2 domains of integrin alpha Human (Homo sapiens) [TaxId: 9606]
d1jv2a2 Thigh, calf-1 and calf-2 domains of integrin alpha Human (Homo sapiens) [TaxId: 9606]
d1jv2a3 Thigh, calf-1 and calf-2 domains of integrin alpha Human (Homo sapiens) [TaxId: 9606]
d1tyeb1 Hybrid domain of integrin beta Human (Homo sapiens) [TaxId: 9606]

Alignment Based On Similarities In Structural Features using Comparer

                             10        20        30        40        50  
d1jv2a1  ( 439 )                       pvItVnagLeVypsiLnqdnktçslpg-ta-
d1jv2a2  ( 599 )                    dnvckPkLeVsvdsdqkkIyig------------
d1jv2a3  ( 738 )                       vlAaVeIrGvSspdhvfLpipnwehkenpet
d1tyeb1  (  58 )    vSeArvledrpLsdkgsgdssqvtqVspqrIaLrLrpd------------
                                           bb  b b   bb               

                             60        70        80        90        100 
d1jv2a1  ( 468 )    --lkvSçFnVrFçLkAdGkgvLprkLnFqVeLlLDklkqkgairRAlFly
d1jv2a2  ( 621 )    ---ddnpLtLiVkAqNqg----egAyeAeLiVsIpl--------qAdfig
d1jv2a3  ( 769 )    eedVgpvVqHiYeLrNngp---ssFskAmLhLqWPykyn--nntLLyILh
d1tyeb1  (  96 )    -----dsknfsIqVr-----------qVeLevrdlPe-------eLsLsF
                          bbbbbbbbbb            bbbbb              b b

                             110       120       130       140       150 
d1jv2a1  ( 516 )    ----------------------------------srspshsknMt-Isrg
d1jv2a2  ( 656 )    vVrnne-------alarlsÇafkten---------qtrqVvÇdLgnpMka
d1jv2a3  ( 814 )    ydidgpMnÇtsdmeinplrIkissldihtLGçgvAqçLkIvÇqVg-rLdr
d1tyeb1  ( 371 )    nAtçlnnevip--------------------------glksÇm---glki
                    b                                     bbbbb       

                             160       170       180       190       200 
d1jv2a1  ( 531 )    glmqçeeliAyLrdeseFr-----dkltpItIfMeYrLdyrTaadttglq
d1jv2a2  ( 690 )    gtqllAGLrFsVhqqs--------emdtsVkFdLqIqSsNl---------
d1jv2a3  ( 892 )    gksAiLyVkSLLw-TetfmnkenqnhsysLkSsAsFnVie-Fpykn--lp
d1tyeb1  ( 392 )    gdtVsFsIeAkVrgçpq---------ekeksFtIkPv-------------
                       bbbbbbbb                  bbbbbbbb             

                             210       220    
d1jv2a1  ( 576 )    PilnqftpanisrqAhIlldcge   
d1jv2a2  ( 723 )    ---fdkvSpvvshkVdLa        
d1jv2a3  ( 938 )    ied---itnstlVtTnVtwg-iq   
d1tyeb1  ( 420 )    -----gfkdsLiVqVtFdçdcacqaq
                              bbbbbbb         

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla ç
positive phi: italic x

Jmol view

Jmol Model View
Jmol Command prompt
Response Logs

Tree based on RMSD between structures

Matrices

1. Percentage Identity Matrix  [View | Download]
2. Distance Matrix  [View | Download]

PCA based on sequence identity

1. PCA  [View]
2. Plot file  [Download]

CUSP Results

CUSP Result   [View | Download]

Alistat - Alignment Statistics

Alignment Statistics  [Download]

SMotif - Conserved Structural Motifs

SMotif Result   [View | Download]

MeanRMS

MeanRMS  [Download]