PASS2
  • Superfamily Details
  • Alignment & HMM

Superfamily Details

Superfamily summary
Superfamily Name:  Pyridoxine 5'-phosphate synthase
Class Name:  Alpha and beta proteins (a/b)
Fold Name:  TIM beta/alpha-barrel
Number of Members:  1
Average Size: 
Members
SCOP ID Name Source
d1m5wa- Pyridoxine 5'-phosphate synthase Escherichia coli [TaxId: 562]

Alignment Based On Similarities In Structural Features using Comparer

                             10        20        30        40        50  
d1m5wa-  (   2 )    aeLlLGVnIdhiAtlrnargtaypdPvqaAfiAEqagAdgITVHLRedrr
                       bbbbb aaaaaaaa        aaaaaaaaa     bbbbb      

                             60        70        80        90        100 
d1m5wa-  (  52 )    HItdrDVriLrqtLdtrMnLeMaVteeMlaiAvetkPhfCCLVpEkrqev
                       aaaaaaaaaa   bbbbbb   aaaaaaaaaa   bbbb        

                             110       120       130       140       150 
d1m5wa-  ( 102 )    tteGGLdVagqrdkMrdACkrLadagIqVsLFIdAdeeqIkAAaeVgApf
                            333aaaaaaaaaaaaa   bbbbbb   aaaaaaaaa    b

                             160       170       180       190       200 
d1m5wa-  ( 152 )    IEIhTGcYadAktdaeqaqelarIakAAtfAaslgLkVnAGhgLtyhnVk
                    bbbb aaaaa   aaaaaaaaaaaaaaaaaaaa   bbbbb       aa

                             210       220       230       240 
d1m5wa-  ( 202 )    aIAaIpeMheLNIghaIigravmtglkdAVaeMkrlMlearg
                    aaa    bbbbbb aaaaaaaaaa aaaaaaaaaaaaaaaa 

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla ç
positive phi: italic x