PASS2
  • Superfamily Details
  • Alignment & HMM

Superfamily Details

Superfamily summary
Superfamily Name:  Exotoxin A, middle domain
Class Name:  Membrane and cell surface proteins and peptides
Fold Name:  Toxins' membrane translocation domains
Number of Members:  1
Average Size: 
Members
SCOP ID Name Source
d1ikpa3 Exotoxin A, middle domain Pseudomonas aeruginosa [TaxId: 287]

Alignment Based On Similarities In Structural Features using Comparer

                             10        20        30        40        50  
d1ikpa3  ( 252 )    eggsLAaLTAhqAÇhlpletFtrhrqprgaeqLeqçGypVqrLValYlaa
                       aaaaaaaaaaa   33333        aaaaa aaaaaaaaaaaaa 

                             60        70        80        90        100 
d1ikpa3  ( 302 )    rlsWnqVdqvIrnAlaspgsggdlGeAIreqpeqArlALtlAaaeSerFv
                       333aaaaaaaaaa     aaaaaaaaa aaaaaaaaaaaaaaaaaaa

                             110       120       130       140 
d1ikpa3  ( 352 )    rqgtgndeagAanadVvsltÇpvaageçaGpadsgdALlerny
                           aaaa    bbbbb           333   bbbbb 

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla ç
positive phi: italic x