PASS2
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Superfamily Details

Superfamily summary
Superfamily Name:  delta-Endotoxin (insectocide), N-terminal domain
Class Name:  Membrane and cell surface proteins and peptides
Fold Name:  Toxins' membrane translocation domains
Number of Members:  3
Average Size: 
Members
SCOP ID Name Source
d1dlca3 delta-Endotoxin (insectocide), N-terminal domain Bacillus thuringiensis tenebrionis, CRYIIIA (BT13) [TaxId: 1444]
d1ciya3 delta-Endotoxin (insectocide), N-terminal domain Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]
d1i5pa3 delta-Endotoxin (insectocide), N-terminal domain Bacillus thuringiensis subsp. kurstaki, CRY2AA [TaxId: 29339]

Alignment Based On Similarities In Structural Features using Comparer

                             10        20        30        40        50  
d1ciya3  (  33 )                                                   ytP
d1dlca3  (  61 )                                                 ttkdV
d1i5pa3  (   1 )    mnnvlnsgrtticdaynvvahdpfsfehksldtIqkewmewkrtdhslyV
                                                                      

                             60        70        80        90        100 
d1ciya3  (  36 )    idiSlsLtqfLlsefvp-----gagFVlgLvdiIWgifgpsqWdaFLvqI
d1dlca3  (  66 )    iqkGisVvgdLlgVvgfpfggaLvsFYtnFlntIWp--sedPWkaFMeQV
d1i5pa3  (  51 )    ApVVGTVssFLlkkvgsl---iGkrILseLwgiIFpsgstnlMqdILreT
                      aaaaaaaaa               aaaaaaa       aaaaaaaaaa

                             110       120       130       140       150 
d1ciya3  (  81 )    EqlInqrIeefaRnqAisrLegLSnlYqiYAesFreWeadpt---npalr
d1dlca3  ( 114 )    ealMdqkIadyAknkAlaeLqgLqnnVedYVsALssWqknpvssrnphsq
d1i5pa3  (  98 )    EqflnqrLntdtlarVnaELigLqanIreFnqqVdnfl-nptqnpvp---
                    aaaa     aaaaaaaaaaaaaaaaaaaaaaaaaaaaa            

                             160       170       180       190       200 
d1ciya3  ( 128 )    eeMriqFndMnsaLttAiplLavqnyqVPLLSVYVQAANLHLSVLRDVSv
d1dlca3  ( 164 )    grIrelFsqAEshFrnSMpsFaisgyevLFLTTyAQAANTHLFLLKDAQi
d1i5pa3  ( 144 )    lsItssVntMqqlFlnrLpqFqiqgyqlLLLPLFAQAANMHLSFIrDVil
                     aaaaaaaaaaaaaaaa3333         aaaaaaaaaaaaaaaaaaaa

                             210       220       230       240       250 
d1ciya3  ( 178 )    fGqrWgfdaatInsryndLtrlignytdyAvrwyntGlerVwgpdsrdwv
d1dlca3  ( 214 )    YGeeWgyekediaefykrQlkLtqeYtdhCvkwynvGldklrgssyeswv
d1i5pa3  ( 194 )    nadeWgIsaatlrtYrdylrnytrdysnyCintyqtafrglntr----lh
                            aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa         aa

                             260       270      
d1ciya3  ( 228 )    rynqFrreLtlTVldIvalFsnYdsrry
d1dlca3  ( 264 )    nfnrYrreMtlTVldLialFplYdVr  
d1i5pa3  ( 240 )    dmlefrtYMflNVfeYvsIWslFk    
                    aaaaaaaaaaaa aaaa           

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla ç
positive phi: italic x

Jmol view

Jmol Model View
Jmol Command prompt
Response Logs

Tree based on RMSD between structures

Matrices

1. Percentage Identity Matrix  [View | Download]
2. Distance Matrix  [View | Download]

PCA based on sequence identity

1. PCA  [View]
2. Plot file  [Download]

CUSP Results

CUSP Result   [View | Download]

Alistat - Alignment Statistics

Alignment Statistics  [Download]

SMotif - Conserved Structural Motifs

SMotif Result   [View | Download]

MeanRMS

MeanRMS  [Download]