PASS2
  • Superfamily Details
  • Alignment & HMM

Superfamily Details

Superfamily summary
Superfamily Name:  Diphtheria toxin, middle domain
Class Name:  Membrane and cell surface proteins and peptides
Fold Name:  Toxins' membrane translocation domains
Number of Members:  1
Average Size: 
Members
SCOP ID Name Source
d1f0la3 Diphtheria toxin, middle domain Corynebacterium diphtheriae [TaxId: 1717]

Alignment Based On Similarities In Structural Features using Comparer

                             10        20        30        40        50  
d1f0la3  ( 201 )    cinldwdvIrdkTktKiesLkehgpIknkmseSpnktvseekAkqyLeeF
                         aaaaaaaaaaaaaaaa  aaaaaaaa        aaaaaaaaaaa

                             60        70        80        90        100 
d1f0la3  ( 251 )    HqtAlehpeLseLktvtgtnpvFaganYAaWAVnVAqvIdsetadnlekT
                    aaaa   333aaaaaaa   333 aaaaaaaaaaaaaa  aaaa  aaaa

                             110       120       130       140       150 
d1f0la3  ( 301 )    taaLsilpgigSVMGiadgaVhHnteeiVAQSIALSSLMVaqAipLvgel
                    aaaa     aaaaa bb  bb    aaaaaaaaaaaaaaaaaaaaaa   

                             160       170      
d1f0la3  ( 353 )    igfaaynFVeSIInlFqvvHnsynrpay
                          aaaaaaaaaaaaaaaaa     

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla ç
positive phi: italic x