PASS2
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Superfamily Details

Superfamily summary
Superfamily Name:  Interleukin 8-like chemokines
Class Name:  Alpha and beta proteins (a+b)
Fold Name:  IL8-like
Number of Members:  14
Average Size: 
Members
SCOP ID Name Source
d1o7za- IP-10/CXCL10 Human (Homo sapiens) [TaxId: 9606]
d1m8aa- Macrophage inflammatory protein, MIP Human (Homo sapiens), ccl20/mip-3a [TaxId: 9606]
d2fhta1 Macrophage inflammatory protein, MIP Kaposi's sarcoma-associated herpesvirus, VMIP-II [TaxId: 37296]
d1b3aa- RANTES (regulated upon activation, normal T-cell expressed and secreted) Human (Homo sapiens) [TaxId: 9606]
d1doka- Monocyte chemoattractant protein-1 (MCP-1, MCAF) Human (Homo sapiens) [TaxId: 9606]
d1el0a- CC chemokine I-309 Human (Homo sapiens) [TaxId: 9606]
d1eiga- Eotaxin-2 Human (Homo sapiens) [TaxId: 9606]
d1g2ta- Eotaxin-3 Human (Homo sapiens) [TaxId: 9606]
d1j8ia- Lymphotactin Human (Homo sapiens) [TaxId: 9606]
d1f2la- Chemokine domain of fractalkine Human (Homo sapiens) [TaxId: 9606]
d1tvxa- Platelet basic protein, PBP Human (Homo sapiens) [TaxId: 9606]
d2j7za1 Stromal cell-derived factor-1 (SDF-1) Human (Homo sapiens) [TaxId: 9606]
d1nr4a- Thymus and activation-regulated chemokine, TRAC Human (Homo sapiens) [TaxId: 9606]
d1rjta- Small inducible cytokine b11 (CXCL11/I-TAC) Human (Homo sapiens) [TaxId: 9606]

Alignment Based On Similarities In Structural Features using Comparer

                             10        20        30        40        50  
d1b3aa-  (   2 )       pyssdttpçÇfayiarplprahIkeyfyT-sg--kÇsnpAVVFvtrk
d1doka-  (   0 )    mqpdainapvtçÇynftnrkisvqrLasyrritss--kÇpkeAVIFktiv
d1eiga-  (   1 )         vvipspççmffvskripenrvvsyqlSsrs--tçlkagviFttkk
d1el0a-  (   1 )    sksmq-vpfsrççfsfaeqeiplrailçyrnts---siÇsneGliFklkr
d1f2la-  (   5 )         vtkçnitçskmt-skipvalLihyqqN-qa--sÇgkrAIILetrq
d1g2ta-  (   1 )      trgsdisktçÇfqyshkplpwtwvrsyeft-sn--sÇsqrAviFttkr
d1j8ia-  (   1 )    vgsevsdk--rtÇvslttqrlpvsriktytiteg-----slrAviFitkr
d1m8aa-  (   5 )              dçÇlgytdrilhpkfIvgftrq-lanegçdinAiiFhtkk
d1nr4a-  (   2 )       rgtnvgreçÇleyfkgaiplrkLktwyqT-se--dÇsrdAiVFvTvq
d1o7za-  (   9 )              çtÇisisnqpVnprslekleii-pasqfçprvEIiAtMkk
d1rjta-  (   1 )      fpmfkrgrÇlçiGpGvkavkvadiEkAsim-ypsnnçdkieviitlke
d1tvxa-  (  23 )            lrçlÇiktts-gihpknIqslevi-gkgthçnqveViAtlkd
d2fhta1  (   4 )       sw-hrpdkçÇlgyqkrpLpqvlLsswypT-sq--lÇskpGVIFlTkr
d2j7za1  (   1 )      kpvslsyrçpÇrffes-hvaranVkhLkilntp--nça-lqivArlkn
                                          333bbbbbb            bbbbb  

                             60        70        80        90        100 
d1b3aa-  (  46 )    -nrqvçAnpekkwVreyInslems                          
d1doka-  (  48 )    -akeiçAdpkqkwVqdSmdhLdkqt                         
d1eiga-  (  44 )    -gqqsçGdpkqeWvqrYmknldakqkkaspr                   
d1el0a-  (  47 )    -gkeaÇAldtvgwvqrHrkmlrhçpskrk                     
d1f2la-  (  46 )    -hrlfÇAdpkeqwVkdAmqhLdrq                          
d1g2ta-  (  46 )    -gkkvçthprkkwvqkyisllktpkql                       
d1j8ia-  (  44 )    -glkvÇAdpqatwvrdvvrsMdrkSntrnnmiqtkptgtqqstntavtlt
d1m8aa-  (  44 )    -klsvçAnpkqtwVkyIvrllsk                           
d1nr4a-  (  46 )    -graiçSdpnnkrVknAvkyLqsl                          
d1o7za-  (  48 )    kgekrçLnpeskaiknllkav                             
d1rjta-  (  48 )    nkgqrçlnpkskqArliikkverk-------------------------n
d1tvxa-  (  63 )    -grkiçLdpdaprIkkIvqkkla------gd                   
d2fhta1  (  47 )    -grqvçAdkskdwVkkLmqqLpvtar                        
d2j7za1  (  45 )    nnrqvçIdpklkwIqeylekaln                           
                       bbbb    aaaaaaaaaa                             

                     
d1b3aa-              
d1doka-              
d1eiga-              
d1el0a-              
d1f2la-              
d1g2ta-              
d1j8ia-  (  93 )    g
d1m8aa-              
d1nr4a-              
d1o7za-              
d1rjta-  (  73 )    f
d1tvxa-              
d2fhta1              
d2j7za1              
                     

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla ç
positive phi: italic x

Jmol view

Jmol Model View
Jmol Command prompt
Response Logs

Tree based on RMSD between structures

Matrices

1. Percentage Identity Matrix  [View | Download]
2. Distance Matrix  [View | Download]

PCA based on sequence identity

1. PCA  [View]
2. Plot file  [Download]

CUSP Results

CUSP Result   [View | Download]

Alistat - Alignment Statistics

Alignment Statistics  [Download]

SMotif - Conserved Structural Motifs

SMotif Result   [View | Download]

MeanRMS

MeanRMS  [Download]