PASS2
  • Superfamily Details
  • Alignment & HMM
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Superfamily Details

Superfamily summary
Superfamily Name:  LysM domain
Class Name:  Alpha and beta proteins (a+b)
Fold Name:  LysM domain
Number of Members:  2
Average Size: 
Members
SCOP ID Name Source
d1e0ga- Membrane-bound lytic murein transclycosylase D, MltD Escherichia coli [TaxId: 562]
d1y7ma2 Hypothetical protein YkuD, N-terminal domain Bacillus subtilis [TaxId: 1423]

Alignment Based On Similarities In Structural Features using Comparer

                             10        20        30        40        
d1e0ga-  (   1 )    dsityrvrkgdslssiAkrhgvnik-dvmrwnsdtanlqpgdkltlfvk
d1y7ma2  (   2 )      ltyqVkqgdtlnsIAadfristaalLqanpslQagltagqsIvIpgl
                       bbb      aaaaaaa                       bbb    

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla ç
positive phi: italic x

Jmol view

Jmol Model View
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Response Logs

Matrices

1. Percentage Identity Matrix  [View | Download]
2. Distance Matrix  [View | Download]

CUSP Results

CUSP Result   [View | Download]

Alistat - Alignment Statistics

Alignment Statistics  [Download]

SMotif - Conserved Structural Motifs

SMotif Result   [View | Download]

MeanRMS

MeanRMS  [Download]