PASS2
  • Superfamily Details
  • Alignment & HMM
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  • Features

Superfamily Details

Superfamily summary
Superfamily Name:  Prion-like
Class Name:  Alpha and beta proteins (a+b)
Fold Name:  Prion-like
Number of Members:  2
Average Size: 
Members
SCOP ID Name Source
d1xu0a- Prion protein domain African clawed frog (Xenopus laevis) [TaxId: 8355]
d1i17a- Prion-like protein Doppel Mouse (Mus musculus) [TaxId: 10090]
Outliers
SCOP ID Name Source
d1i4ma- Prion protein domain Human (Homo sapiens) [TaxId: 9606]

Alignment Based On Similarities In Structural Features using Comparer

                             10        20        30        40        50  
d1i17a-  (   1 )    rvaenrpGaFikqgr--kldidF-gaeGnryYaanywqFPDgiyyegçs-
d1xu0a-  ( 125 )          iggymlGnavgrMsyqfnnpmEsryYndyynqMPnrvyrPmyrg
                            bbb              aaaaaaaaa 33    bbb      

                             60        70        80        90        100 
d1i17a-  (  47 )    eanvtkemlvtsÇvnatqaAnqaefsrek---qdsklHqrvlwrlikeiÇ
d1xu0a-  ( 169 )    eeyvsedrfvrdCynmSvteyiikpaegknnselnqldttvKsqiireMC
                         aaaaaaaaaaaaaaa               aaaaaaaaaaaaaaa

                             110  
d1i17a-  (  94 )    sakhÇdfwlergaa
d1xu0a-  ( 219 )    itEyrrgs      
                    aa            

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla ç
positive phi: italic x

Jmol view

Jmol Model View
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Response Logs

Matrices

1. Percentage Identity Matrix  [View | Download]
2. Distance Matrix  [View | Download]

CUSP Results

CUSP Result   [View | Download]

Alistat - Alignment Statistics

Alignment Statistics  [Download]

SMotif - Conserved Structural Motifs

SMotif Result   [View | Download]

MeanRMS

MeanRMS  [Download]