PASS2
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Superfamily Details

Superfamily summary
Superfamily Name:  RNase A-like
Class Name:  Alpha and beta proteins (a+b)
Fold Name:  RNase A-like
Number of Members:  4
Average Size: 
Members
SCOP ID Name Source
d1dy5a- Ribonuclease A (also ribonuclease B, S) Cow (Bos taurus) [TaxId: 9913]
d1onca- Amphibian cytotoxic ribonuclease Frog (Rana pipiens), P-30 [TaxId: 8404]
d1gqva- Eosinophil-derived neurotoxin (EDN) Human (Homo sapiens) [TaxId: 9606]
d1agia- Angiogenin Cow (Bos taurus) [TaxId: 9913]

Alignment Based On Similarities In Structural Features using Comparer

                             10        20        30        40        50  
d1agia-  (   1 )    a--qddyryihFltqhydakpkgr-ndeyÇfnmMknrrltr-pÇkdrNTF
d1dy5a-  (   1 )        ketaaakFerqhMdsstsaAsssnnqmMksrnltkdrÇkpvntF
d1gqva-  (   0 )    mkppqftwAqWFetqhinMtsq------qÇtnAMqvinnyqrrÇknqntF
d1onca-  (   2 )           dwltFqkkhit-ntrdV----dÇdniMstnlFh---çkdknTF
                           aaaaaaaaa             aaaaaaa          bbbb

                             60        70        80        90        100 
d1agia-  (  47 )    IHgnkndIkaIÇedrnGqpyr-------gdlriSksefqITiÇkhkggss
d1dy5a-  (  47 )    vHesladvqas---qknvaÇkg---qtnÇyqSystMsitdÇretgsSk
d1gqva-  (  44 )    llttfanvvng---npnmtÇpsnktrknÇHhSgsqvplihÇnlttpsp
d1onca-  (  37 )    IysrpepVkaiÇk----------giias-knvlTtsefyLSDÇnvtsr--
                    b   aaaaa 33      bb          bbb    bbbbbbbb     

                             110       120       130       140       
d1agia-  (  90 )    --rppÇrYgAtedsrvIVVgçen-----------glPVhFdesfitprh
d1dy5a-  (  92 )    --ypnÇaYkttqankhiivaÇegn---------pyvPvhfdasv     
d1gqva-  (  91 )    qnisnÇrYaqtpanmfYivaÇdnrdqrrDppqypvvPvhlDrii     
d1onca-  (  74 )    ----pçkYklkkstnkFÇVtÇen-----------qaPvhfvgvgsç   
                           bbbbbbbb bbbbbb             bbbbbbbb      

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla ç
positive phi: italic x

Jmol view

Jmol Model View
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Response Logs

Tree based on RMSD between structures

Matrices

1. Percentage Identity Matrix  [View | Download]
2. Distance Matrix  [View | Download]

PCA based on sequence identity

1. PCA  [View]
2. Plot file  [Download]

CUSP Results

CUSP Result   [View | Download]

Alistat - Alignment Statistics

Alignment Statistics  [Download]

SMotif - Conserved Structural Motifs

SMotif Result   [View | Download]

MeanRMS

MeanRMS  [Download]