PASS2
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Superfamily Details

Superfamily summary
Superfamily Name:  Cysteine proteinases
Class Name:  Alpha and beta proteins (a+b)
Fold Name:  Cysteine proteinases
Number of Members:  44
Average Size: 
Members
SCOP ID Name Source
d1khqa- Papain Papaya (Carica papaya) [TaxId: 3649]
d3gcba- Bleomycin hydrolase Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]
d2cb5a- Bleomycin hydrolase Human (Homo sapiens) [TaxId: 9606]
d1me4a- Cruzain Trypanosoma cruzi [TaxId: 5693]
d1gmya- (Pro)cathepsin B Human (Homo sapiens) [TaxId: 9606]
d1k3b.1 Cathepsin C (dipeptidyl peptidase I), catalytic domain Human (Homo sapiens) [TaxId: 9606]
d1cs8a- (Pro)cathepsin L Human (Homo sapiens) [TaxId: 9606]
d1deua- (Pro)cathepsin X Human (Homo sapiens) [TaxId: 9606]
d1cv8a- Staphopain StpA Staphylococcus aureus [TaxId: 1280]
d1dkia- Streptococcal pyrogenic exotoxin B Streptococcus pyogenes [TaxId: 1314]
d2oula1 Falcipain 2 Plasmodium falciparum [TaxId: 5833]
d1xkga1 Major mite fecal allergen der p 1 House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]
d1ukfa- Avirulence protein Avrpph3 Pseudomonas syringae pv. phaseolicola [TaxId: 319]
d1qmya- FMDV leader protease Foot-and-mouth disease virus [TaxId: 12110]
d2r9fa1 Calpain large subunit, catalytic domain (domain II) Rat (Rattus norvegicus), mu-type [TaxId: 10116]
d1vjja4 Transglutaminase catalytic domain Human (Homo sapiens), TGase E3 [TaxId: 9606]
d1x3za1 Peptide:N-glycanase 1, PNG1 Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]
d2f4ma1 Peptide:N-glycanase 1, PNG1 Mouse (Mus musculus) [TaxId: 10090]
d1e2ta- Arylamine N-acetyltransferase Salmonella typhimurium [TaxId: 90371]
d1w5ra1 Arylamine N-acetyltransferase Mycobacterium smegmatis [TaxId: 1772]
d1w4ta1 Arylamine N-acetyltransferase Pseudomonas aeruginosa [TaxId: 287]
d1xd3a- Ubiquitin carboxyl-terminal hydrolase UCH-l3 Human (Homo sapiens) [TaxId: 9606]
d1cmxa- Ubiquitin carboxyl-terminal hydrolase UCH-l3 Synthetic, based on Saccharomyces cerevisiae sequence
d1nbfa- Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) Human (Homo sapiens) [TaxId: 9606]
d1vjva- Ubiquitin carboxyl-terminal hydrolase 6 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2ayna1 Ubiquitin carboxyl-terminal hydrolase 14 Human (Homo sapiens) [TaxId: 9606]
d2hd5a1 Ubiquitin carboxyl-terminal hydrolase 2, USP2 Human (Homo sapiens) [TaxId: 9606]
d1nlna- Human adenovirus 2 proteinase, adenain Mastadenovirus H2 [TaxId: 10515]
d1euva- Ulp1 protease C-terminal domain Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1th0a- Sentrin-specific protease 2, SENP2 Human (Homo sapiens) [TaxId: 9606]
d2bkra1 Sentrin-specific protease 8, SENP8 Human (Homo sapiens) [TaxId: 9606]
d1iu4a- Microbial transglutaminase Streptoverticillium mobaraense [TaxId: 35621]
d1tffa- Ubiquitin thiolesterase protein OTUB2 (Otubain-2) Human (Homo sapiens) [TaxId: 9606]
d1y08a- IgG-specific endopeptidase IdeS (Sib38) Streptococcus pyogenes [TaxId: 1314]
d2im9a1 Hypothetical protein Lpg0564 Legionella pneumophila [TaxId: 446]
d2bu3a1 Primitive phytochelatin synthase Nostoc sp. pcc 7120 [TaxId: 103690]
d2io8a2 Glutathionylspermidine synthase, amidase domain Escherichia coli [TaxId: 562]
d2evra2 Cell wall-associated hydrolase Spr C-terminal domain Nostoc punctiforme [TaxId: 272131]
d2ebfx3 Dermonecrotic toxin, ToxA Pasteurella multocida [TaxId: 747]
d2ihoa2 Agglutinin MOA Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]
d2hlya1 Hypothetical protein Atu2299 Agrobacterium tumefaciens [TaxId: 358]
d2j7qa1 Tegument protein M48; N-terminal domain Murine cytomegalovirus (MCMV) [TaxId: 10366]
d2if6a1 Hypothetical protein YiiX Escherichia coli [TaxId: 562]
d2z0da1 Cysteine protease ATG4B Human (Homo sapiens) [TaxId: 9606]

Alignment Based On Similarities In Structural Features using Comparer

We are working on the alignment for this superfamily and will be soon ready with it. Sorry! for the inconvience.
Please, check after some days.
solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla ç
positive phi: italic x

Jmol view

Currently we are working with the structural superposition for this superfamily and soon we will be rady with it. Please visit this page after some days.

Tree based on RMSD between structures

Currently we are not ready with the tree representation for this superfamily. Sorry! for the inconvience.
Please, check after some days.

Matrices

We are working on the percentage identity matrix for this superfamily and soon we will be ready with it. Please visit this page after some days.
We are working on the distance matrix for this superfamily and soon we will be ready with it. Please visit this page after some days.

PCA based on sequence identity

We are working on PCA for this superfamily and soon we will be ready with it. Please visit this page after some days.
We are working on the plot file and soon we will be ready with it. Please visit this page after some days.

CUSP Results

We are working on CUSP result for this superfamily and soon we will be ready with it. Please visit this page after some days.

Alistat - Alignment Statistics

We are working on the alignment statistics for this superfamily. Please visit this page after some days.

SMotif - Conserved Structural Motifs

We are working on the SMotif results for this superfamily. Please visit this page after some days.

MeanRMS

We are working on the MeanRMS results for this superfamily. Please visit this page after some days.