PASS2
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Superfamily Details

Superfamily summary
Superfamily Name:  Lysozyme-like
Class Name:  Alpha and beta proteins (a+b)
Fold Name:  Lysozyme-like
Number of Members:  19
Average Size: 
Members
SCOP ID Name Source
d1dxja- Plant class II chitinase Jack bean (Canavalia ensiformis) [TaxId: 3823]
d2vb1a1 Lysozyme Chicken (Gallus gallus) [TaxId: 9031]
d1iiza- Lysozyme Tasar silkworm (Antheraea mylitta) [TaxId: 34739]
d1b9oa- alpha-Lactalbumin Human (Homo sapiens) [TaxId: 9606]
d1swya- Phage T4 lysozyme Bacteriophage T4 [TaxId: 10665]
d1k28a3 Tail-associated lysozyme gp5, catalytic domain Bacteriophage T4 [TaxId: 10665]
d1xjua- Endolysin Lyz Bacteriophage P1 [TaxId: 10678]
d1am7a- Lambda lysozyme Bacteriophage lambda [TaxId: 10710]
d1gbsa- Lysozyme Australian black swan (Cygnus atratus) [TaxId: 8868]
d1qsaa2 70 kDa soluble lytic transglycosylase, SLT70 Escherichia coli [TaxId: 562]
d1qusa- 36 kDa soluble lytic transglycosylase, SLT35 Escherichia coli [TaxId: 562]
d1chka- Endochitosanase Streptomyces sp., strain N174 [TaxId: 1931]
d1qgia- Endochitosanase Bacillus circulans [TaxId: 1397]
d1xsfa1 Probable resuscitation-promoting factor RpfB Mycobacterium tuberculosis [TaxId: 1773]
d2ikba1 Hypothetical protein NMB1012 Neisseria meningitidis [TaxId: 487]
d2nr7a1 Putative secretion activator PG0293 Porphyromonas gingivalis [TaxId: 837]
d2oqoa1 Penicillin-binding protein 1a, PBP1a Aquifex aeolicus [TaxId: 63363]
d2olua1 Penicillin-binding protein 2, PBP2 Staphylococcus aureus [TaxId: 1280]
d2igsa1 Hypothetical protein PA2222 Pseudomonas aeruginosa [TaxId: 287]

Alignment Based On Similarities In Structural Features using Comparer

                             10        20        30        40        50  
d1am7a-  (   1 )                                                      
d1b9oa-  (   1 )                                                      
d1chka-  (   1 )                     ag----------agLd-----dphkkeIAMeLv
d1dxja-  (   2 )                                                      
d1gbsa-  (   1 )                                                      
d1iiza-  (   1 )                                                      
d1k28a3  ( 130 )    nvlnqggevgydsssnviqdsnldtainpddrplseiptddnPnmsMaeM
d1qgia-  (   1 )                     aspddnFspeTlqfLrnnTgLdGeqWNNIMkLI
d1qsaa2  ( 451 )                                                      
d1qusa-  (  40 )                                                      
d1swya-  (   1 )                                                mnifeM
d1xjua-  (  29 )                                                 rTnqa
d1xsfa1  (  23 )                                                      
d2igsa1  (   4 )                                                      
d2ikba1  (   2 )                                           sdkFnqfInrv
d2nr7a1  (   2 )                                            anVklLlpYI
d2olua1  (  68 )                                                      
d2oqoa1  (  57 )                                                      
d2vb1a1  (   1 )                                                      
                                                                      

                             60        70        80        90        100 
d1am7a-  (   1 )                                                      
d1b9oa-  (   1 )                                                      
d1chka-  (  19 )    SSAenssl-dwkaqYkyIedigdgrGytGGIigFCSg-----tgdMleLV
d1dxja-  (   2 )                                                      
d1gbsa-  (   1 )                                                      
d1iiza-  (   1 )                                                      
d1k28a3  ( 180 )    LrrDeglrl-------kVywd-tegyPtIG-IGhlI-mkqpvr-------
d1qgia-  (  34 )    NkPeqddl-nWikyYGyÇediedergytIGLFgAtTGgsrdthPdGPdLF
d1qsaa2  ( 451 )                                                      
d1qusa-  (  40 )                                   mvepqhnvmqMggdFannp
d1swya-  (   7 )    LriDeglrl-------kIykd-tegyyTIG-IghlL-tksp---------
d1xjua-  (  34 )    GlelIg-------------naegÇrr---dpymçPagvwtdg--------
d1xsfa1  (  23 )                                                      
d2igsa1  (   4 )                                                      
d2ikba1  (  13 )    lsheggyanhp----------kdpggetnw--gIt----------krtaq
d2nr7a1  (  12 )    lkwegGfvhdpadaggatnkgvtiatWkrV--gyd----------kdgDg
d2olua1  (  68 )                       klqdpipakiydk----ngelvktldngqrh
d2oqoa1  (  57 )                                               tigiqkr
d2vb1a1  (   1 )                                                      
                                                                      

                             110       120       130       140       150 
d1am7a-  (   1 )                                                      
d1b9oa-  (   1 )                                                      
d1chka-  (  63 )    qhYtdlep--gNiLakylpaLkkVn----gsashsgLgtpFtkdWatAAk
d1dxja-  (   2 )                                                      
d1gbsa-  (   1 )                                         rtdçyGnVnrIdt
d1iiza-  (   1 )                                                      
d1k28a3  ( 213 )    --------dMaqInkvLskqVgreItgnpGsIt----------------m
d1qgia-  (  83 )    kaYDaakgasnpsAdgALkrlgInGkmkgsiLeIkdsekvFçgkIkklqn
d1qsaa2  ( 451 )                                                      
d1qusa-  (  59 )    nAqqFIdkMvnkhgfdrqqLQeiLsqAk--------rldsVlrlMdnqgp
d1swya-  (  38 )    --------slnaAkseLdkaIgrnCn---gvIt----------------k
d1xjua-  (  60 )    ------------igngv---------tpgvrkt----------------d
d1xsfa1  (  23 )                                                      
d2igsa1  (   4 )      iniyqnPGqsLAniYkgfArqÇn--------p------------gfvf
d2ikba1  (  41 )    angyn--------------------------------------gsra---
d2nr7a1  (  50 )    didve--------------------------------------dlkll--
d2olua1  (  95 )    ehVnlkdVpk-skdavlaTednrFy--------ehgaldyg-------fg
d2oqoa1  (  64 )    fyVsidkIpehVinAFVATedrnFw--------hHfGiDpvaivraaivn
d2vb1a1  (   1 )                                                      
                                                                      

                             160       170       180       190       200 
d1am7a-  (   1 )                                               mve----
d1b9oa-  (   1 )                               kqFtkçeLsqlLkd--Idgyggi
d1chka-  ( 107 )    dtvFqqAQnd-eRdrvyFdpAVsqAkaDgL-rALGQFAYYDAIVmHgpgn
d1dxja-  (   2 )     dVgsvIdaslFdqLLkhRndpaÇeGkgfYsynaFVtAArsfggFGttgd
d1gbsa-  (  14 )    tGAsçkTAkpeglsyçgvpASktIAerDlkAMdryktiIkk--VGeklçV
d1iiza-  (   1 )                               krftrçgLVneLrkqgFd--enl
d1k28a3  ( 239 )    eeAttlFerdladmqrdIkshskVGpVwqaVnrSRqMALENMAFqmg---
d1qgia-  ( 133 )    daaWrkAMWe-TFynvyIrySVeqArqrgFtsAVTIGSFVDTALnQgatg
d1qsaa2  ( 451 )                                    layndlFkr--yTsgkeI
d1qusa-  ( 111 )    ngaWlryrkkfit--------pdnvqnGvvFWnqyedALnr--AwqvygV
d1swya-  (  61 )    deAekLFnqdVaaavrgIlrnakLkpVydsLdavrecALINMVfqmg---
d1xjua-  (  75 )    qqiaadwekniliAerçInq----hFrGkdMpdnAFSAMTSAAFNmg---
d1xsfa1  (  23 )                                                  ppvi
d2igsa1  (  32 )    peaqtieaWdIPlrLhpeFIpggdiskAdqqYstlLaqEiangvtigfrv
d2ikba1  (  52 )    ---treqAis-iYrkAFwerY--radq----peaVafqFfdACvnHgy--
d2nr7a1  (  60 )    ---tdddVLnrVLkpfYWdrW--kAdl--IesqkVANILVDWVWGSGk--
d2olua1  ( 143 )    segAStLTqqVVkdafls----------i----grkaqeAylSyrLeqey
d2oqoa1  ( 112 )    vqggsTITqqLAknlflt----------rertlerkikEallAikiertf
d2vb1a1  (   1 )                               kvfgrçelAaaMkrhgldnyrgy
                                                    aa aaaaaa         

                             210       220       230       240       250 
d1am7a-  (   4 )    --innqrkAFLdMLAsegTdng--rqktrnhGyD---VIvggeLftdysd
d1b9oa-  (  22 )    alpeLIÇTMfhtSgydTqaive-nd-------------------------
d1chka-  ( 155 )    dptsfggIrktAmkka------------rTpaqggd---ettYLngFLda
d1dxja-  (  51 )    tntrkrEVAAFLAQTSheTtgGaagsp--dgpyA---wGYÇfVterdksn
d1gbsa-  (  62 )    EpAVIAGIISreShAGkvLk------------------------------
d1iiza-  (  22 )    -MrdWVçLVeneSaryTdkianvnk-------------------------
d1k28a3  ( 286 )    -----vggVa---------k-----------------fntMLtAMlagdw
d1qgia-  ( 182 )    gsdtLqgLLarS---g------------sss----n---ektFMknFHak
d1qsaa2  ( 467 )    pqSYAMAIArqeSawnpkvksp----------------------------
d1qusa-  ( 151 )    ppeIIVGIIGVeTrWGrvmgktrILDALATLSFn---yprraeyFsgELe
d1swya-  ( 108 )    -----etgVa---------g-----------------ftnSlrmLqqkrw
d1xjua-  ( 118 )    -----çnsLr---------tyysk-------argmrveTsIhkwAqkgew
d1xsfa1  (  27 )    dGsiWdaiAgçeAggnwaintgn---------------------------
d2igsa1  (  83 )    nekervçnveIlplL-t--Sa--q-nLdrIkarfg-----sgyldrFkgs
d2ikba1  (  91 )    ---gnaArLQrAAgvpd--dgvIg-avSlkaInslp---endLllrFNae
d2nr7a1  ( 101 )    ---yGIviPQrilgvqa--dGiVg-nkTlqaVnsad---pdelFesIFdA
d2olua1  ( 183 )    skddIFqvYLNkiyY-S--dgVtG-ikAAAkyYFn---kdLkdLnlAEeA
d2oqoa1  ( 152 )    dkkkIMelYLNqiyL-g--sgAyG-VEAAAqvYfg---khVweLsldeAA
d2vb1a1  (  24 )    slGnWvÇAAkfeSnfntqatnr-nt-------------------------
                        aaaaaa a                                      

                             260       270       280       290       300 
d1am7a-  (  48 )    Hprk---lvtlnp----klkstGAGrYqll---s--rdayrkqlglk---
d1b9oa-  (  46 )    -------------------eSteyGLFQISNklWÇkssqvpqSrndis
d1chka-  ( 190 )    RkaaMlt-----e-------------------------------------
d1dxja-  (  96 )    kyçdpgtpçpa------gksYyGRGPIqLthNyn--YaqAGralgvdLin
d1gbsa-  (  82 )    --------------nGwgdrgngfGLMqVdkrsh---------------k
d1iiza-  (  46 )    ------------------ngSrdyGLFQInDkywÇskgs--tpGkdÇnvt
d1k28a3  ( 305 )    ekAykaG-----rd---------------------s----------lw--
d1qgia-  ( 210 )    RtlvVdt-----n-------------------------------------
d1qsaa2  ( 489 )    --------------------vgaSGLMqImpgtA--thTvkmfsipgyss
d1qusa-  ( 198 )    tFLlMArdeqddplnlkGsfaGaMGyGqFmPssy--kqyAvdfsgdghi-
d1swya-  ( 127 )    deAavnL-----ak---------------------s----------rw--
d1xjua-  ( 147 )    vnMÇnhL-----pd------------------fvns----------ngvp
d1xsfa1  (  50 )    ---------------------gyyGGvqfdqgtW--eangGlryap----
d2igsa1  ( 123 )    pNvyPtd--VgfStda--------sggi--sqeSGL-------lVSYgVn
d2ikba1  ( 133 )    Rlvfytk-----lgtf--------t-------------------------
d2nr7a1  ( 142 )    rrefLed-----iTar--------sikk--yedsig----------rkAt
d2olua1  ( 226 )    YLAGLPq-------------------------------------vpnnyN
d2oqoa1  ( 195 )    lLAALPk-------------------------------------apakyN
d2vb1a1  (  48 )    ------------------dgStdYGilqinSrwWÇndgrtpgsrnnip
                                                                      

                             310       320       330       340       350 
d1am7a-  (  85 )    -----dFspksQ-dAVALqqIker--------------------------
d1b9oa-  (  77 )    ÇdkFldddItdD-imÇAkkILdi-kgidyWLahkalÇ-tekleqwlçekl
d1chka-  ( 198 )    ------aahd------dtsRVdtEQrvFLkagnld---------------
d1dxja-  ( 138 )    nPdlVardaviS-FkTAIwfWmtpq-------------------------
d1gbsa-  ( 103 )    pqgtw--ngevH-ItqGTtiLtdfIkrIq---kkfp--------------
d1iiza-  (  76 )    ÇsqLltddItva-StÇAkkIykr-tkFdaWsgwdnhÇ-nhsnpd-issç 
d1k28a3  ( 317 )    yqqtk-----gr-AsrVTmIILtGNLesYgvevkt               
d1qgia-  ( 218 )    ------kynk---ppNGknRVk-QWdtLVdmgkmn---------------
d1qsaa2  ( 517 )    pgqLl--dpetN-InIGTSyLqyVyqqfg---------------------
d1qusa-  ( 245 )    --nLw--dpvDA-IGSVAnyFkahgWvkg---dqvAVmAngqApglpngf
d1swya-  ( 139 )    ynqtp-----nr-AkrVitTFrtGtwdaYknl                  
d1xjua-  ( 164 )    lrgLk-----iR-RekErqlÇltglvn------eh               
d1xsfa1  (  73 )    --rAdlAtreeq-iavAevtrlrqgWgaWpvçAarAgar           
d2igsa1  ( 154 )    LrtltpgtwqatLPedIkalVgpGvglrldapnfs-----dvfntIk---
d2ikba1  ( 145 )    ----------sf-GkgWvrrVa-qnlihAsa                   
d2nr7a1  ( 167 )    ereLlrhTnkrf-lrgWlnRLe-dIrkl                      
d2olua1  ( 239 )    IydhpkaAedrK--ntVLylh-yhkrit------d-----kqwedAk---
d2oqoa1  ( 208 )    pfyhperAlqrr--nlVLkrMleegyIt------p-----eqyeeAv---
d2vb1a1  (  80 )    ÇsallssditaS-vnÇAkkivsdgngMnaWvawrnrÇkgtdvqawirgÇr
                              aa aaaaaaaaa                            

                             360       370       380       390       400 
d1am7a-  ( 103 )    ----gAlpmId-------------------------------rGdIrqAI
d1b9oa-                                                               
d1chka-  ( 221 )    -----Ln-------------ppLkWkTygdpyvins              
d1dxja-  ( 162 )    gnkpSChdVITnrwtpsaadva-----------------AnRtpgFGVIT
d1gbsa-  ( 133 )    ---------------------------------------swtkdqqLKGG
d1iiza-                                                               
d1k28a3                                                               
d1qgia-  ( 243 )    -----LknVdseIa----qvTdwemk                        
d1qsaa2  ( 543 )    --------------------------------------------nNrIFS
d1qusa-  ( 287 )    ktkysisqLaaagLtpqqpLgnhqqAsLLrLdvgtgyqYwYG--LpNFyT
d1swya-                                                               
d1xjua-                                                               
d1xsfa1                                                               
d2igsa1  ( 197 )    --sgLrYTtAVtLL----LAyFAai                         
d2ikba1                                                               
d2nr7a1                                                               
d2olua1  ( 273 )    --kidLkanlvnrt----peerqnid                        
d2oqoa1  ( 242 )    --nk                                              
d2vb1a1  ( 129 )    l                                                 
                                                                      

                             410       420       430       440       450 
d1am7a-  ( 118 )    drCsniasLPgagyg-----------------qfehkAdsLiakFkea--
d1b9oa-                                                               
d1chka-                                                               
d1dxja-  ( 195 )    NIInGgiEÇg----r-----------------gpspaSgdRigFYkrYCd
d1gbsa-  ( 144 )    ISAYnagagnVr----------syarMDi---gTthdDYAnDVVARAqyY
d1iiza-                                                               
d1k28a3                                                               
d1qgia-                                                               
d1qsaa2  ( 549 )    SAAYnagpgrVrtWlgnsagridAvaFvesIpfseTrgYVknVLayDayy
d1qusa-  ( 335 )    ITrYn-----------------------------hsthYAMAVwqLGqaV
d1swya-                                                               
d1xjua-                                                               
d1xsfa1                                                               
d2igsa1                                                               
d2ikba1                                                               
d2nr7a1                                                               
d2olua1                                                               
d2oqoa1                                                               
d2vb1a1                                                               
                                                                      

                             460       470 
d1am7a-  ( 150 )    --gGtvr             
d1b9oa-                                 
d1chka-                                 
d1dxja-  ( 224 )    vLhLsygpnlnÇrdQrpFgg
d1gbsa-  ( 181 )    kqhgY               
d1iiza-                                 
d1k28a3                                 
d1qgia-                                 
d1qsaa2  ( 599 )    ryfmgdkptlMsatEwgrrY
d1qusa-  ( 356 )    alarvq              
d1swya-                                 
d1xjua-                                 
d1xsfa1                                 
d2igsa1                                 
d2ikba1                                 
d2nr7a1                                 
d2olua1                                 
d2oqoa1                                 
d2vb1a1                                 
                                        

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla ç
positive phi: italic x

Jmol view

Jmol Model View
Jmol Command prompt
Response Logs

Tree based on RMSD between structures

Matrices

1. Percentage Identity Matrix  [View | Download]
2. Distance Matrix  [View | Download]

PCA based on sequence identity

1. PCA  [View]
2. Plot file  [Download]

CUSP Results

CUSP Result   [View | Download]

Alistat - Alignment Statistics

Alignment Statistics  [Download]

SMotif - Conserved Structural Motifs

SMotif Result   [View | Download]

MeanRMS

MeanRMS  [Download]