PASS2
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Superfamily Details

Superfamily summary
Superfamily Name:  Microbial ribonucleases
Class Name:  Alpha and beta proteins (a+b)
Fold Name:  Microbial ribonucleases
Number of Members:  5
Average Size: 
Members
SCOP ID Name Source
d2c4ba1 Barnase Bacillus amyloliquefaciens [TaxId: 1390]
d1lnia- RNase Sa Streptomyces aureofaciens [TaxId: 1894]
d1i0va- RNase T1 Aspergillus oryzae [TaxId: 5062]
d1rtua- RNase U2 Ustilago sphaerogena [TaxId: 5271]
d1jbsa- Restrictocin Fungus (Aspergillus restrictus) [TaxId: 5064]

Alignment Based On Similarities In Structural Features using Comparer

                             10        20        30        40        50  
d1i0va-  (   1 )       açdytÇg--------------sYs----ssdVstaqaaGyklhe-
d1jbsa-  (   1 )        atWtÇiNqqlnpktnkwedkrllYs----qakAesNShhAplsdg-
d1lnia-  (   1 )                          dvsgtvçlsalppeAtdTLnlias--dG
d1rtua-  (   1 )    çdipqsTnÇg--------------gnvYs----nddIntAIqgAlddva-
d2c4ba1  (   3 )                                    vintfdgVAdyLqtyhkl
                                              bb      aaaaaaaaaaa     

                             60        70        80        90        100 
d1i0va-  (  29 )    -dgetvgsnsYPhkYnny----------e-gfdFsv--------------
d1jbsa-  (  42 )    -k----tgSsyPhwftngydgngklikgrtpikFgkadÇdrpPkhsqnGm
d1lnia-  (  27 )    pfpy---s----------------------qDgvvfqnresvLptqs---
d1rtua-  (  32 )    -ngdrPd--nyPhqyyea----------sedItLçÇg-------------
d2c4ba1  (  21 )    PdnYitkseAqalgWvaskGnLadvapgkSIGgdifsnregkLpgks---
                                                                      

                             110       120       130       140       150 
d1i0va-  (  53 )    ---sspyyeWPIlssgdvYsg-g-----spgaDRVVFNen-nqlAgVITh
d1jbsa-  (  87 )    gkdDhYlLeFPTfpdGhdYkfdskkpkedpgpARVIYtypnkvGIVAh
d1lnia-  (  49 )    ---ygyYheyTVitpgar----------trgtrRIItGeatq-edYyTgd
d1rtua-  (  57 )    ---sgpwseFPLvy-ngpYyS-srdnyvspgpDRVIYqtntGeFÇATVTh
d2c4ba1  (  68 )    ---grtWreADInY-tsg----------frnsdRILySsd-w-lIykTtd
                          bbbbb                      bbbbb      bbbb  

                             160    
d1i0va-  (  93 )    tgas-gnnfveÇt   
d1jbsa-  ( 137 )    qrgnq-gdlrlçsh  
d1lnia-  (  85 )    hya----tFslIdqtç
d1rtua-  ( 102 )    tgaasydgftqÇs   
d2c4ba1  ( 102 )    ayq----tFtkir   
                             bb     

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla ç
positive phi: italic x

Jmol view

Jmol Model View
Jmol Command prompt
Response Logs

Tree based on RMSD between structures

Matrices

1. Percentage Identity Matrix  [View | Download]
2. Distance Matrix  [View | Download]

PCA based on sequence identity

1. PCA  [View]
2. Plot file  [Download]

CUSP Results

CUSP Result   [View | Download]

Alistat - Alignment Statistics

Alignment Statistics  [Download]

SMotif - Conserved Structural Motifs

SMotif Result   [View | Download]

MeanRMS

MeanRMS  [Download]