PASS2
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Superfamily Details

Superfamily summary
Superfamily Name:  LeuD/IlvD-like
Class Name:  Alpha and beta proteins (a/b)
Fold Name:  The "swivelling" beta/beta/alpha domain
Number of Members:  5
Average Size: 
Members
SCOP ID Name Source
d1acoa1 Aconitase A, C-terminal domain Cow (Bos taurus) [TaxId: 9913]
d1l5ja2 Aconitase B, second N-terminal domain Escherichia coli [TaxId: 562]
d1v7la- Isopropylmalate isomerase LeuD Pyrococcus horikoshii [TaxId: 53953]
d2b3ya1 ron-responsive element binding protein 1, C-terminal domain Human (Homo sapiens) [TaxId: 9606]
d2hi6a1 Hypothetical protein AF0055 Archaeoglobus fulgidus [TaxId: 2234]
Outliers
SCOP ID Name Source
d2gp4a1 6-phosphogluconate dehydratase EDD Shewanella oneidensis [TaxId: 70863]

Alignment Based On Similarities In Structural Features using Comparer

                             10        20        30        40        50  
d1acoa1  ( 529 )    v---dvsptsqrlqlle-------pfdkwdgkdLedLQILIkVkgkCtTd
d1l5ja2  ( 161 )                                 alaekltVTV-FkVtgeTnTd
d1v7la-  (   1 )                                    mittgkV-WkfgddisTd
d2b3ya1  ( 631 )    dklffwnskstyiksppffenltldlqpp--ksivdAyVLLnLgdsvtTd
d2hi6a1  (   1 )                          vkfaCraitrgraegeA-lvtkeyiSFl
                                                     bbbbbb bb      aa

                             60        70        80        90        100 
d1acoa1  ( 569 )    hISaa-----------------------gpwlkfrghldnISnNLLi--g
d1l5ja2  ( 181 )    dLSP------------------------apdawsrpdiplHAlaMLknar
d1v7la-  (  18 )    eITPg------------------------rynlt-kdpkeLakiAFi-ev
d2b3ya1  ( 679 )    hISpagnIarnsPAAryLtnrgltpreFnsYgsRrgNdaVMarGTFanir
d2hi6a1  (  28 )    ggidk------------------------------------etGivkedC
                    aa                                   aaaa         

                             110       120       130       140       150 
d1acoa1  ( 594 )    AiNsenrk-ansVrnavtqefgpVPdTAryYkqhgirWVVIGdenYGegs
d1l5ja2  ( 207 )    e----------gIePdqpg-vvGPikqIealqqkgfpLAYVGd-vVGtgs
d1v7la-  (  42 )    rp--------------------dFarnVr------pgDVVVAgknFGigs
d2b3ya1  ( 729 )    LlNrFLnkqapqTihlpsgeildVfdAAerYqqaglpLIVLAgkeYGags
d2hi6a1  (  42 )    eikg-----------------esva-----------grilvFp--gGkgs
                                            aaa           bbb         

                             160       170       180       190       200 
d1acoa1  ( 643 )    sr-ehSAlEPRfLg------------GrAIITksFariHetnLKkqGLLP
d1l5ja2  ( 245 )    sr-kSATnSVLwfMGddiphvpnkrggglCLGgkIapiFfntMEdaGALP
d1v7la-  (  66 )    sr-eSAAlALkalg------------IaGVIAesFgriFyrnAiniGIpL
d2b3ya1  ( 779 )    sr-dWAAkGPflLg------------IkAVLAesYeriHrsnLVgmgVIP
d2hi6a1  (  62 )    tvGsyvllnlrkng----------vAPkAiinkktetiiAvGAamAeiPl
                        aaaaaaaa                bbbb    aaaaaaaaa    b

                             210       220       230       240       250 
d1acoa1  ( 680 )    LtFadpadyn--kIhpvDkLtIqgLkdFapgkpLtCiIkhpngtqetIlL
d1l5ja2  ( 294 )    IeV----dVs--nLnmgdvIDVyPy-------kgeVrn-hetge-llatF
d1v7la-  ( 103 )    Llg----kTe--gLkdgdlVtVnWe-------tGeVrkg-----deilmF
d2b3ya1  ( 816 )    LeYlpgenadalgLtGqerYtIiIpenLkpqmkVqVkL--dtg--ktfqA
d2hi6a1  ( 102 )    vevrdekFfe--avktgdrvvvnAd-------eGyvelie          
                    bb                bbbbb           bbbb        bbb 

                             260       270       280       290    
d1acoa1  ( 728 )    nHtF-netqIewfrAGSalnrmkelqqk                  
d1l5ja2  ( 329 )    elk--tdvLidevragGripLiigrglttkarealglphsdvfrqa
d1v7la-  ( 135 )    epLe--dflLeIVrEgGileyirrrgdlci                
d2b3ya1  ( 862 )    vMrFdtdveltyflngGilnymirkmak                  
d2hi6a1                                                           
                           aaaaaaa   aaaaaaa                      

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla ç
positive phi: italic x

Jmol view

Jmol Model View
Jmol Command prompt
Response Logs

Tree based on RMSD between structures

Matrices

1. Percentage Identity Matrix  [View | Download]
2. Distance Matrix  [View | Download]

PCA based on sequence identity

1. PCA  [View]
2. Plot file  [Download]

CUSP Results

CUSP Result   [View | Download]

Alistat - Alignment Statistics

Alignment Statistics  [Download]

SMotif - Conserved Structural Motifs

SMotif Result   [View | Download]

MeanRMS

MeanRMS  [Download]