PASS2
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Superfamily Details

Superfamily summary
Superfamily Name:  Glycosyl hydrolases family 6, cellulases
Class Name:  Alpha and beta proteins (a/b)
Fold Name:  7-stranded beta/alpha barrel
Number of Members:  3
Average Size: 
Members
SCOP ID Name Source
d1oc7a- Cellobiohydrolase II (Cel6) Humicola insolens, Cel6a [TaxId: 34413]
d1dysa- Cellobiohydrolase II (Cel6) Humicola insolens, Cel6b [TaxId: 34413]
d1uoza- Putative cellulase Rv0062 (Cel6, CelA1) Mycobacterium tuberculosis [TaxId: 1773]

Alignment Based On Similarities In Structural Features using Comparer

                             10        20        30        40        50  
d1dysa-  (   3 )           gnPFsgrtLlvnsdYsskLd-qTrqaFlsrgdqtnAakVkyVq
d1oc7a-  (  87 )       apyngnPFegVqlwaNnyYrseVhtlAipqIt---dpalraaAsaVA
d1uoza-  (  80 )    ghiegrhanpLagkpFyvdpa--saAmvaArnan------ppnaeLtsVA
                                            aaa                aaaaaa 

                             60        70        80        90        100 
d1dysa-  (  45 )    ekVGTFYwIsnifll-rdIdvAiqnAraAkarg--enPIVGLVLyNLPdr
d1oc7a-  ( 131 )    e-vpSFqwLdrnvTVdtlLvqtLseIreaNqaganpqyAAQIVVyDLPdR
d1uoza-  ( 123 )    n-tpqSywLdqafppatVggtVaryTgaAqaag----AMPVLTLyGIPhr
                          bbb        aaaaaaaaaaaaaa         bbbb      

                             110       120       130       140       150 
d1dysa-  (  92 )    dÇsageSsgeLklsqnGlnrYkneYVnpFAqkLkaAsdVqFAVILEpdaI
d1oc7a-  ( 180 )    dÇaaaasnGewaiannGvnnYka-YInrIreILisfsdVrTILVIEPdsL
d1uoza-  ( 168 )    dçgsyasgGfa-----tgtdYrg-WIdaVasgLg---sspATIIVEPdAL
                                     aaaaaa  aaaaaaaa       bbbbb     

                             160       170       180       190       200 
d1dysa-  ( 142 )    GNMVtg-tsafÇrnArgpQqeAIGyAIsqLq-ashIhLYLDVAnGGwLGw
d1oc7a-  ( 229 )    ANMVtnmnvpkÇsgAastYreLTiyALkqLd-lpHVAMYMDAghAGwLGw
d1uoza-  ( 209 )    AmAdçls-----pdqrqeRFdLVryAVdtLtrDpaAAVYVDAghSrwls-
                    aa          aaaaaaaaaaaaaaaaa      bbbbbb         

                             210       220       230       240       250 
d1dysa-  ( 190 )    adklepTAqEVatIlqkAgnnAkIrGFSSNVsnYNpystsnpppyTsgSp
d1oc7a-  ( 278 )    paniqpAAelFAkIyedAgkPrAVrGLATNVanYnAwsvsspPpyTspNp
d1uoza-  ( 253 )    ---aeaMAarLndVgVg-----rArGFSLNVsnFyt--------------
                       aaaaaaaaaa            bbbb                     

                             260       270       280       290       300 
d1dysa-  ( 240 )    SpDEsrYAtnIAnaMrqrglptqFIIDQSRval-sgARsewgqNVnpA
d1oc7a-  ( 328 )    nyDEkhYIeaFrplLeargFpAqFIVDQGRSgkqpTgQkeWghwÇNAigT
d1uoza-  ( 281 )    tdeEigyGeaISglTn----gshYVIDTSRNgagp-apdaplnNpsgr
                       aaaaaaaaaaa        bbbbb                       

                             310       320       330       340       350 
d1dysa-  ( 289 )    GFgqpfttnTnnpnVDAIVWVkPGGeSdgq---------------çgmgg
d1oc7a-  ( 378 )    GFGmrPtanTghqyVDAFVWVkPGGeCngTsdttaarydyhÇgleDAlkp
d1uoza-  ( 326 )    ALgapPttaTaGahADAyLWIKrPGeSdGtÇgr----------------g
                                  bbbbb                               

                             360       370  
d1dysa-  ( 324 )    ApaagmwFdaYAqmLTqnAhdeIa
d1oc7a-  ( 428 )    ApeagqWFneYFiqLLrnAn-ppf
d1uoza-  ( 360 )    epqagrfvsqyAidlAhnag---q
                            aaaaaaaaa       

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla ç
positive phi: italic x

Jmol view

Jmol Model View
Jmol Command prompt
Response Logs

Tree based on RMSD between structures

Matrices

1. Percentage Identity Matrix  [View | Download]
2. Distance Matrix  [View | Download]

PCA based on sequence identity

1. PCA  [View]
2. Plot file  [Download]

CUSP Results

CUSP Result   [View | Download]

Alistat - Alignment Statistics

Alignment Statistics  [Download]

SMotif - Conserved Structural Motifs

SMotif Result   [View | Download]

MeanRMS

MeanRMS  [Download]