PASS2
  • Superfamily Details
  • Alignment & HMM

Superfamily Details

Superfamily summary
Superfamily Name:  Malate synthase G
Class Name:  Alpha and beta proteins (a/b)
Fold Name:  TIM beta/alpha-barrel
Number of Members:  1
Average Size: 
Members
SCOP ID Name Source
d1n8ia- Malate synthase G Mycobacterium tuberculosis [TaxId: 1773]

Alignment Based On Similarities In Structural Features using Comparer

                             10        20        30        40        50  
d1n8ia-  (   2 )    tdrvsvgnLrIarvLydFVnneALpgTdidpdsFWagVdkVvadLtpqNq
                      bbbb  bbbbaaaaaaaaa         aaaaaaaaaaaaaaaaaaaa

                             60        70        80        90        100 
d1n8ia-  (  52 )    allnaRdelqaqIdkwhrrdmdaYrqfLteigYllpepddftItTsgVDa
                    aaaaaaaaaaaaaaaaaa  aaaaaaaaaa                   a

                             110       120       130       140       150 
d1n8ia-  ( 108 )    eItttaGPQLVVpVlnarfALnAAnARWgsLydALygtdVIpetdgAekg
                    aaa     bbbbb   aaaaaaaa333bbbaaaaaa              

                             160       170       180       190       200 
d1n8ia-  ( 158 )    ptynkvRgdkViayArkfLddSVpLssgsFgdAtgFtVqdgqLvVaLpdk
                        aaaaaaaaaaaaaaaaaa       333  bbbbb  bbbbb    

                             210       220       230       240       250 
d1n8ia-  ( 208 )    stgLanpgqFaGytgaaesPtSVLLinhgLhIEIlidpesqvGttDrAgV
                    bb    333bbbbbbb  bbbbbbbbb  bbbbbbb      333    b

                             260       270       280       290       300 
d1n8ia-  ( 258 )    kdViLESAITTIMDFEDsVAAVdaadKVlGYrnWLgLNkgdlaarvLnrd
                    bbbbbb   bbbbb         aaaaaaaaaaaaaaa            

                             310       320       330       340       350 
d1n8ia-  ( 318 )    rnYtapgggqftlpGrSLMFVRNvGHlmtNdAIvdtdgseVfEGIMDALF
                    bbbb     bbbb    bbbbb      bbbbbbb    bbbaaaaaaaa

                             360       370       380       390       400 
d1n8ia-  ( 368 )    TGLIAiHGlkasdinSrtgSIYIVKPKMHGpaEVaFTceLFsrVEdvLgl
                    aaaaa3333           bbbbb     aaaaaaaaaaaaaaaaaa  

                             410       420       430       440       450 
d1n8ia-  ( 423 )    pqntMKIGIMDEERrTTVnLkaCIkaAadRVVFINTgflDRTGDEIhTSM
                        bbbbbbb  aaaa  aaaaaaa    bbbbbb aaaaaaaaaaa 3

                             460       470       480       490       500 
d1n8ia-  ( 473 )    eAgpMvrkgtMksqpWIlaYedhNVdaGLaAgFsgrAQVGKgMwtmTelM
                    33     333333 aaaaaaaaaaaaaaaa       bbbb        a

                             510       520       530       540       550 
d1n8ia-  ( 523 )    adMvetKiaqPraGAsTAwVPsptAATLHALHYHqvdVaavQqglagkrr
                    aaaaaa  aaaa    bbbb  aaaaaaaaaaaaa  aaaaaaaa     

                             560       570       580       590       600 
d1n8ia-  ( 573 )    AtieqLLtiPlAkelawapdeireEVdnNCQSILGYVVrWVDqgvGcskV
                      aaaa            aaaaaaaaaaaaaaaaaaaaaaaaa    bbb

                             610       620       630       640       650 
d1n8ia-  ( 623 )    pdihdvalmEdRAtLRISSQLLANWlrhgvItsadVraSLerMAplVdrq
                    b     bbbb aaaaaaaaaaaaaaaa     aaaaaaaaaaaaaaaaaa

                             660       670       680       690       700 
d1n8ia-  ( 673 )    nayrpMapnfddsiAFlAAqeLIlsGaqqpnGYTEpILhrrrrefkaraa
                             333 aaaaaaaaaaa 333 333  aaaaaaaaaaaaaaaa

                     
d1n8ia-  ( 727 )    e
                     

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla ç
positive phi: italic x