PASS2
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Superfamily Details

Superfamily summary
Superfamily Name:  FMN-linked oxidoreductases
Class Name:  Alpha and beta proteins (a/b)
Fold Name:  TIM beta/alpha-barrel
Number of Members:  18
Average Size: 
Members
SCOP ID Name Source
d1juba- Dihydroorotate dehydrogenase Lactococcus lactis, isozyme A [TaxId: 1358]
d1ep3a- Dihydroorotate dehydrogenase Lactococcus lactis, isozyme B [TaxId: 1358]
d1d3ga- Dihydroorotate dehydrogenase Human (Homo sapiens) [TaxId: 9606]
d1tv5a1 Dihydroorotate dehydrogenase Plasmodium falciparum [TaxId: 5833]
d1oyaa- Old yellow enzyme (OYE) Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]
d1q45a- 12-oxophytodienoate reductase (OPR, OYE homolog) Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]
d1p4ca- Membrane-associated (S)-mandelate dehydrogenase Pseudomonas putida [TaxId: 303]
d1vyra- Pentaerythritol tetranirate reductase Enterobacter cloacae [TaxId: 550]
d1djqa1 Trimethylamine dehydrogenase, N-terminal domain Methylophilus methylotrophus, w3a1 [TaxId: 17]
d1ps9a1 2,4-dienoyl-CoA reductase, N-terminal domain Escherichia coli [TaxId: 562]
d1kbia1 Flavocytochrome b2, C-terminal domain Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1gtea2 Dihydropyrimidine dehydrogenase, domain 4 Pig (Sus scrofa) [TaxId: 9823]
d1ofda2 Alpha subunit of glutamate synthase, central and FMN domains Synechocystis sp. [TaxId: 1143]
d1p0ka- Isopentenyl-diphosphate delta-isomerase Bacillus subtilis [TaxId: 1423]
d1vcfa1 Isopentenyl-diphosphate delta-isomerase Thermus thermophilus [TaxId: 274]
d1vhna- Putative flavin oxidoreducatase TM0096 Thermotoga maritima [TaxId: 2336]
d1tb3a1 Hydroxyacid oxidase Rat (Rattus norvegicus) [TaxId: 10116]
d1z41a1 NADPH dehydrogenase NamA Bacillus subtilis [TaxId: 1423]
Outliers
SCOP ID Name Source
d1viza- PcrB protein homolog YerE Bacillus subtilis [TaxId: 1423]
d2f6ua1 (S)-3-O-geranylgeranylglyceryl phosphate synthase Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Alignment Based On Similarities In Structural Features using Comparer

                             10        20        30        40        50  
d1d3ga-  (  30 )                                                      
d1djqa1  (   1 )                                                      
d1ep3a-  (   1 )                                                      
d1gtea2  ( 533 )                                                      
d1juba-  (   1 )                                                      
d1kbia1  (  98 )                                                      
d1ofda2  ( 431 )    faektlfndaqtVlqQqaAFGYTaedvemvVVpMAsqGkeptfCMgDdTP
d1oyaa-  (   1 )                                                      
d1p0ka-  (  21 )                                                      
d1p4ca-  (   4 )                                                      
d1ps9a1  (   1 )                                                      
d1q45a-  (   8 )                                                      
d1tb3a1  (   1 )                                                      
d1tv5a1  ( 158 )                                                      
d1vcfa1  (  23 )                                                      
d1vhna-  (   5 )                                                      
d1vyra-  (   2 )                                                      
d1z41a1  (   2 )                                                      
                                                                      

                             60        70        80        90        100 
d1d3ga-  (  30 )                                                      
d1djqa1  (   1 )                                                      
d1ep3a-  (   1 )                                                      
d1gtea2  ( 533 )                                                      
d1juba-  (   1 )                                                      
d1kbia1  (  98 )                                                      
d1ofda2  ( 481 )    lAVLShkprlLYdYFkQrFAQVtnppidplrenlvMsLaMfLGkrgnlle
d1oyaa-  (   1 )                                                      
d1p0ka-  (  21 )                                                      
d1p4ca-  (   4 )                                                      
d1ps9a1  (   1 )                                                      
d1q45a-  (   8 )                                                      
d1tb3a1  (   1 )                                                      
d1tv5a1  ( 158 )                                                      
d1vcfa1  (  23 )                                                      
d1vhna-  (   5 )                                                      
d1vyra-  (   2 )                                                      
d1z41a1  (   2 )                                                      
                                                                      

                             110       120       130       140       150 
d1d3ga-  (  30 )                                                      
d1djqa1  (   1 )                                                      
d1ep3a-  (   1 )                                                      
d1gtea2  ( 533 )                                                      
d1juba-  (   1 )                                                      
d1kbia1  (  98 )                                                      
d1ofda2  ( 531 )    pkaesartiklrsPLVneveLqaIktgqLqvaeVsTLydldgvnsLedaL
d1oyaa-  (   1 )                                                      
d1p0ka-  (  21 )                                                      
d1p4ca-  (   4 )                                                      
d1ps9a1  (   1 )                                                      
d1q45a-  (   8 )                                                      
d1tb3a1  (   1 )                                                      
d1tv5a1  ( 158 )                                                      
d1vcfa1  (  23 )                                                      
d1vhna-  (   5 )                                                      
d1vyra-  (   2 )                                                      
d1z41a1  (   2 )                                                      
                                                                      

                             160       170       180       190       200 
d1d3ga-  (  30 )                                                      
d1djqa1  (   1 )                                                      
d1ep3a-  (   1 )                                                      
d1gtea2  ( 533 )                                                      
d1juba-  (   1 )                                                      
d1kbia1  (  98 )                                                      
d1ofda2  ( 581 )    tnLvktAiatVqagAeILVLTDrpngaiLtenqSFIPPLLAVGAVhhhLi
d1oyaa-  (   1 )                                                      
d1p0ka-  (  21 )                                                      
d1p4ca-  (   4 )                                                      
d1ps9a1  (   1 )                                                      
d1q45a-  (   8 )                                                      
d1tb3a1  (   1 )                                                      
d1tv5a1  ( 158 )                                                      
d1vcfa1  (  23 )                                                      
d1vhna-  (   5 )                                                      
d1vyra-  (   2 )                                                      
d1z41a1  (   2 )                                                      
                                                                      

                             210       220       230       240       250 
d1d3ga-  (  30 )                                                      
d1djqa1  (   1 )                                                      
d1ep3a-  (   1 )                                                      
d1gtea2  ( 533 )                                                      
d1juba-  (   1 )                                                      
d1kbia1  (  98 )                                                      
d1ofda2  ( 631 )    raglrlkAsLIVDTAQCWsTHHFACLVGYGASAICPYLALESVRqwwlde
d1oyaa-  (   1 )                                                      
d1p0ka-  (  21 )                                                      
d1p4ca-  (   4 )                                                      
d1ps9a1  (   1 )                                                      
d1q45a-  (   8 )                                                      
d1tb3a1  (   1 )                                                      
d1tv5a1  ( 158 )                                                      
d1vcfa1  (  23 )                                                      
d1vhna-  (   5 )                                                      
d1vyra-  (   2 )                                                      
d1z41a1  (   2 )                                                      
                                                                      

                             260       270       280       290       300 
d1d3ga-  (  30 )                                                      
d1djqa1  (   1 )                                                      
d1ep3a-  (   1 )                                                      
d1gtea2  ( 533 )                                                      
d1juba-  (   1 )                                                      
d1kbia1  (  98 )                                                      
d1ofda2  ( 681 )    kTqklmengrldrIdLptALknYrqSVeaGLfkILSKmGislLasYhgaq
d1oyaa-  (   1 )                                                      
d1p0ka-  (  21 )                                                      
d1p4ca-  (   4 )                                                      
d1ps9a1  (   1 )                                                      
d1q45a-  (   8 )                                                      
d1tb3a1  (   1 )                                                      
d1tv5a1  ( 158 )                                                      
d1vcfa1  (  23 )                                                      
d1vhna-  (   5 )                                                      
d1vyra-  (   2 )                                                      
d1z41a1  (   2 )                                                      
                                                                      

                             310       320       330       340       350 
d1d3ga-  (  30 )                                                      
d1djqa1  (   1 )                                                      
d1ep3a-  (   1 )                                                      
d1gtea2  ( 533 )                                                      
d1juba-  (   1 )                                                      
d1kbia1  (  98 )       apgEtkediarkeqlksllppldnIinLydFeylAsqtlt-------
d1ofda2  ( 731 )    iFEAIGLgaeLveyAFagTtSrVgGLtiadVagevmvFhgmAfkklenfG
d1oyaa-  (   1 )                                                      
d1p0ka-  (  21 )                                                      
d1p4ca-  (   4 )                              nlfnVedYrklAqkrLp-------
d1ps9a1  (   1 )                                                      
d1q45a-  (   8 )                                                      
d1tb3a1  (   1 )                              plvcLadFkahAqkqls-------
d1tv5a1  ( 158 )                                                      
d1vcfa1  (  23 )                                                      
d1vhna-  (   5 )                                                      
d1vyra-  (   2 )                                                      
d1z41a1  (   2 )                                                      
                                                                      

                             360       370       380       390       400 
d1d3ga-  (  30 )               matgderfyaehlmptlqglldpesahrlavrfTslglL
d1djqa1  (   1 )                                                      
d1ep3a-  (   1 )                                                      
d1gtea2  ( 533 )                                                      
d1juba-  (   1 )                                                      
d1kbia1  ( 138 )    ---------------kqAwayYsSGAn---devThreNh-----nAYhrI
d1ofda2  ( 785 )    fvnyrpggEyHmnspeMSksLhkAVaaydhyelYrqyLkdrpvtaLRDLL
d1oyaa-  (   1 )                                                     s
d1p0ka-  (  21 )                                       ret-------gLddI
d1p4ca-  (  21 )    ---------------kmvydyLeGGAe---deygvkhNr-----dVFqqw
d1ps9a1  (   1 )                                                      
d1q45a-  (   8 )                                                      
d1tb3a1  (  18 )    ---------------ktswDfIeGeAd---dGiTyseNi-----aAFkri
d1tv5a1  ( 158 )             fesynPefflyd-iflkfçlkyidgeiçhdlflllGkyniL
d1vcfa1  (  23 )                                      kttt-------gLegf
d1vhna-  (   5 )                                                      
d1vyra-  (   2 )                                                      
d1z41a1  (   2 )                                                      
                                                                      

                             410       420       430       440       450 
d1d3ga-  (  69 )    Pf---------qdsdmLeVrvlghkF----rNPVGIAAg-FDk-------
d1djqa1  (   1 )          ardpkHdiLfepiqIgpktL----rnrFYQVPhaigAGS--d--
d1ep3a-  (   1 )              mtennrLsVkLpgLdL----kNPIIPas-gcFg-------
d1gtea2  ( 533 )                    isveMaglkF----iNPFGLaSaaPTt-------
d1juba-  (   1 )                   mLnttFanakF----anPFMNaSgvhCm-------
d1kbia1  ( 165 )    ffkpkilvdv--rkVdIstdMLgshV----dVPFYVsAtalCklGnp---
d1ofda2  ( 847 )    dfnadqp-aisleeVe---------svesIVkrFCTgGms--LGaLS---
d1oyaa-  (   2 )    fvkdfkpqaLgdtnLfkpikIgnNeL----lHrAVIPPltRmRAlhpgnI
d1p0ka-  (  29 )    tfvhvslpdLaleqVdistkIgelsS----sSPIFInAmtggggklT---
d1p4ca-  (  48 )    rfkpkrlvdv--srrslqaeVLgkrq----sMPLLIgPtglNgALwp---
d1ps9a1  (   1 )              sypsLfapldLgfttL----kNrVLMgSmhtglee--ypd
d1q45a-  (   8 )              snetLfssykMgrFdL----shRVVLAPmtRCRAl--ngv
d1tb3a1  (  45 )    rlrprylrdm--skVdtrttIqgqeI----sAPICISPtafHSIAwp---
d1tv5a1  ( 198 )    Pydt------sndsiyAcTnIkhLdF----iNPFGVAAg-FDk-------
d1vcfa1  (  32 )    rlryqalagLalseVdLttpFlgktL----kAPFligat-----eng---
d1vhna-  (   5 )                                   vkVGLAPagytD-------
d1vyra-  (   2 )              a-eklFtplkvgavtA----pnrvFMaPltRlRSiepgdi
d1z41a1  (   2 )               arkLftpitikd-tl----kNrIV-sPcysShek--dGk
                                      bbb  bbb       bbb              

                             460       470       480       490       500 
d1d3ga-  ( 101 )    -----hGeAVdgLYkM-gFGFVEIGSV-TPk--pqegnp----------r
d1djqa1  (  37 )    kp-gfQsahRsvKAeG-gWAALNTEyCSInpeSDDthrlSArIwdegdvr
d1ep3a-  (  29 )    -----FGeeyakyydLnkLGSIMVkAT-tlh--prfGnp----------t
d1gtea2  ( 556 )    -----sssmIrrAFea-gWGFALTkTF-Sldkdivt-nv----------s
d1juba-  (  25 )    -----tiedLeeLkas-qAGAYITkSS-Tle--kreGnp----------l
d1kbia1  ( 206 )    --leGEkdVArGCGqgvtkVPQMIStl-AsC--------s----peeIie
d1ofda2  ( 882 )    --rEAHETLAIAMnr--LgAkSNSGeG-GEd--------------vvRyl
d1oyaa-  (  48 )    PNrdwAveYYtqRAqr-pGTMIITeGAFIspqAGgyd-nAPGVwseeQmv
d1p0ka-  (  72 )    --yeiNksLArAAsq--agIPLAVGsQ-msALkdpserlS----YeiVrk
d1p4ca-  (  89 )    ---kGDlaLArAAtk--agIPFVLSTa-Snm--------s----IedLar
d1ps9a1  (  35 )    Ga-erLAafYaerArh-gVALIVsGGiAPdltGVgme-ggamLndasqip
d1q45a-  (  42 )    Pn-aaLaeYYaqRT-t-pgGFLISEGTmVspgSaGfP-hVPGIysdeQVe
d1tb3a1  (  86 )    ---dGEkSTArAAqe--anICYVISSy-ASy--------s----LedIva
d1tv5a1  ( 230 )    -----nGvCIdSILkL-gFSFIEIGTI-Tpr--gqtgna----------k
d1vcfa1  (  74 )    --erinlalaeAAea--lgVG--lgsG-riLLerpealrs----fr-Vrk
d1vhna-  (  18 )    ------sAFRtLAfew-gAdfAFSeVs-Akgflns---------------
d1vyra-  (  37 )    Pt-plMgeYYrqRA---sAGliiSEAtqisaqAkGyA-GAPGlhspeqia
d1z41a1  (  37 )    lt-pfH-ahyisrAiG-qVGLiIVEASAVnpqGritd-qDLGIwsdeHie
                          aaaaaaaa       bbb                          

                             510       520       530       540       550 
d1d3ga-  ( 132 )    prvfrLpe--------dqAvInrygFnShGLsvVeh-rLra----rqqkq
d1djqa1  (  85 )    nL----kaMTdeVhkygAlAGVELWYGGAHAPNm---esratprGPsq-y
d1ep3a-  (  61 )    prvaeta----------sGmLnaiglqNpGlevImtekLpw----Lnenf
d1gtea2  ( 588 )    priVrGttsgpmygpgqsSfLnieliSektAayWcq-SVte----Lkadf
d1juba-  (  56 )    pryvdL-e--------l-gSInsmgLPNlgFdyYld-YVlk----nqke-
d1kbia1  ( 241 )    aapsd---------------------------------------------
d1ofda2  ( 913 )    tLddVdsegnSptLphLh--------------------------------
d1oyaa-  (  96 )    eW----tkIFnaIhekkSfVWVQLWVLGWAAfPdnLardglrYDSASdnv
d1p0ka-  ( 113 )    eNp-----------------------------------------------
d1p4ca-  ( 121 )    qC------------------------------------------------
d1ps9a1  (  82 )    hH----rtITeaVhqegGkIALQIlHtGRYSyqp-------hLvAPsa-l
d1q45a-  (  88 )    aW----kqVVeaVhakgGfIFCQLWHVGRAShavyQp-nggsPiSSTn-k
d1tb3a1  ( 118 )    aAp-----------------------------------------------
d1tv5a1  ( 261 )    pRifrdve--------srSIInscGFnNmGCdkVte-nLil----FRkrq
d1vcfa1  ( 114 )    vAp-----------------------------------------------
d1vhna-  (  47 )    --------------------------------qkteellPq-----pher
d1vyra-  (  82 )    aW----kkitagvhaedGriAvqlWHtGRiShssiqp-ggqaPvSAsa-l
d1z41a1  (  84 )    gF----aklTeqVkeqgSkIGIQLaHAGRkAeLe------gdIfAPsa-i
                                                                      

                             560       570       580       590       600 
d1d3ga-  ( 169 )    a------------klte-dGlPLGVNLGknk-tsvdaaedYAeGVrvLGp
d1djqa1  ( 127 )    aSefet----------------lsyCkeMdlsdIaqVQqfYvdAAkrSrd
d1ep3a-  (  97 )    p------------------eLpIIANVAgs------eeadYvaVCakIGd
d1gtea2  ( 633 )    p------------------dnIVIASImCs-----ynkndWmeLSrkAea
d1juba-  (  90 )    ----------------naqegpIFFSIAGm------saaeNiaMLkkIqe
d1kbia1  ( 246 )    -------------------kQiqWYQLyvns-d----rkitddlVknVek
d1ofda2  ( 931 )    g------------LqngDtAnSAIKQIAsgr----------fGvtpeYlm
d1oyaa-  ( 142 )    fmdaeQe-----akakkann----pQhsLtkdeIkqYikeYvqAAknSia
d1p0ka-  ( 116 )    -------------------nglIFAnLgseA---------taaqAkeAve
d1p4ca-  ( 123 )    -------------------dgdLWFQLyVi--h----reiAqgMVlkAlh
d1ps9a1  ( 120 )    qApiNr-----------------fvPheLsheeIlqLidnFArCAqlAre
d1q45a-  ( 132 )    pIsenrwrVllpd----gshvkYpkPraLeaseIprvvedYclSAlnAir
d1tb3a1  ( 121 )    -------------------egFRWFQLyMks-d----wdfNkqmVqrAea
d1tv5a1  ( 298 )    e------------edklLskhIVGVSIGknk-dtvnIvddLkyCInkIGr
d1vcfa1  ( 117 )    -------------------kALliANLgLaq-L----rrygrddLlrLve
d1vhna-  (  60 )    ---------------------nVAVQIfgs------epneLseAAriLSe
d1vyra-  ( 126 )    nAn---trtSlrdengnairvdtttPraleldeipgivndFrqAvaNAre
d1z41a1  ( 123 )    afde-q----------------satPve-saekvkeTVqeFkqAAarAke
                                             bb          aaaaaaaaaaaaa

                             610       620       630       640       650 
d1d3ga-  ( 205 )    --LAdYLVVNvSspn---ta------------------------------
d1djqa1  ( 161 )    -AgFdIVYVYGAhSYLPLQFLNpyYNkrtdkYGg----------------
d1ep3a-  ( 123 )    aaNVkAIELnIscpN---vkh-----------------------------
d1gtea2  ( 660 )    sg-AdALELnLscph-----g-----------------------------
d1juba-  ( 118 )    sdFsgITELnLScpn---vp------------------------------
d1kbia1  ( 272 )    -lgVkALFVTvDApslgqrekdmklkfsntkktn-------veesqg---
d1ofda2  ( 959 )    --sGkqLEIkMA------qGAKPGeGgqLpgkKVs--------eyIAmLR
d1oyaa-  ( 183 )    -agAdGVEIHSAnGyLLNQFLDphSNtrtdeYGg----------------
d1p0ka-  ( 138 )    MIgAnALQIhln------viqeif--------------------------
d1p4ca-  ( 148 )    -tgYtTLVLTtdvavngyrerdlhnrfkippfLtlkNfegidlgkmdkan
d1ps9a1  ( 153 )    -AgYdGVEVMGSeGyLINEFlTlrTNqRsdqWGg----------------
d1q45a-  ( 178 )    -AgFdGIEIHGAhGYLIDQFLKdgINdrtdqYGg----------------
d1tb3a1  ( 147 )    -lgFkALVITidTpvlgnrrrdkrnqlnleakdlralkea----------
d1tv5a1  ( 335 )    --yADYIAINVSsPn---Tp------------------------------
d1vcfa1  ( 144 )    -LeAdALaFHvN------plQeavqr------------------------
d1vhna-  (  83 )    --kykwIDLnAgcpvrkvvke-----------------------------
d1vyra-  ( 173 )    -AgFdlvElHSAhGYllHqFlSpsSNqrtdqYGg----------------
d1z41a1  ( 156 )    -AgFdVIEIHAAhGyLIHEFLSplSNhRtdeYGg----------------
                         bbbbb                                        

                             660       670       680       690       700 
d1d3ga-  ( 220 )    -------g-Lg-----kaelrrlLtkVlqerdglrrvh------rPaVLV
d1djqa1  ( 194 )    -----------slenrArFWleTLekVkhaVG-----------sdCAIAT
d1ep3a-  ( 141 )    -------g-gqaFGtdpevAaaLVkaCkavSk-------------vpLYV
d1gtea2  ( 680 )    -------m-glaCGqdpelVrnICrwVrqAVq-------------ipFFA
d1juba-  ( 135 )    -------g-epqlAydfeaTekLLkeVftfFt-------------kpLGV
d1kbia1  ( 318 )    ---asrals-kfidps--ltwkdIeelkkkTk-------------lpIVI
d1ofda2  ( 993 )    rskpgvtli-SppPHhdIysiedLaqLIydLhqinp--------eAqVSV
d1oyaa-  ( 216 )    -----------sienrArFTleVVdaLveAig-----------hek-VGL
d1p0ka-  ( 164 )    ---------------s--galkrIeqICsrVs-------------vpVIV
d1p4ca-  ( 197 )    leMqaalms-rqmdas--fnweALrwLrdlWp-------------hkLLV
d1ps9a1  ( 186 )    -----------dyrnrmrFAveVVraVrerVg-----------ndFIIIY
d1q45a-  ( 211 )    -----------sianRCrFLkqVVegVVsaIg-----------Ask-VGV
d1tb3a1  ( 203 )    ---------------s--fcwndLslLqsiTr-------------LpIIL
d1tv5a1  ( 350 )    -------g-LrdnQ-eagkLknIIlsVkeeIdnleflWfNttkkkPlVFV
d1vcfa1  ( 163 )    ----------gdtdfr--gLverLaelLp-Lp-------------fpV-V
d1vhna-  ( 102 )    -------gAGGALLkdlrhFryIVreLrksVs-------------gkFSV
d1vyra-  ( 206 )    -----------svenrArlvlevvdavcnews-----------adr-iGi
d1z41a1  ( 189 )    -----------spenrYrFLreIIdeVkqvwd-------------gpLFV
                                       aaaaaaaaaaa                 bbb

                             710       720       730       740       750 
d1d3ga-  ( 255 )    KIaPdlt------------sqdkedIAsVVkel------gIdGLIVTntT
d1djqa1  ( 222 )    RFGVdTvygp----gqIeAevdGqkFVemAdsl-------VdMWDITIGD
d1ep3a-  ( 170 )    KLSPnvt--------------dIvpIAkaVeaa------gAdGLTMIntl
d1gtea2  ( 709 )    KLtPnvt--------------dIvsIArAAkeG------gAdGVTATntv
d1juba-  ( 164 )    KLPPYfd------------lvhFdiMAeiLnqF------pLtYVNSVnsi
d1kbia1  ( 349 )    KGV---q---------------rtedVikAAei------gVsGVVLSNh-
d1ofda2  (1034 )    kLVAEig---------------IGtiAagVAkA------nAdIIQISGh-
d1oyaa-  ( 243 )    rLSPYgvfnsMsGGaetgIvaQYayVAgeLekrAka-gkrLAFVHLvEpr
d1p0ka-  ( 184 )    kevgfGM---------------skasAgkLyeA------gAaAVDIGgr-
d1p4ca-  ( 231 )    KGl---l---------------sAedAdrCiae------gAdGVILSNh-
d1ps9a1  ( 214 )    rLSMldlVe-----dggtf-aetveLAqaIeaA------gAtIINTGIGW
d1q45a-  ( 238 )    RVSPaidhLdAt-Ds--dplsLGlaVVgmLnklQgvngskLAYLHVtqpr
d1tb3a1  ( 223 )    KGI---l---------------tkedAelAmkh------nVqGIVVSNh-
d1tv5a1  ( 429 )    KLAPdln------------qeqKkeIAdVLleT------nIdGMIISntT
d1vcfa1  ( 187 )    kEVghGl---------------sreaAlalrdl------pLaaVdVaGa-
d1vhna-  ( 132 )    kTRLGwe------------kneVeeIYrILvee------gVdeVFIhTRt
d1vyra-  ( 233 )    rvSPigtFqnvdngp--neeadAlylieelakr------giAYlHMSEtd
d1z41a1  ( 215 )    RvSAsDytd-----kGLdi-adHigFAkw-keq------gvdLiDCSSGa
                    bb                     aaaaaaaaa          bbbb    

                             760       770       780       790       800 
d1d3ga-  ( 287 )    vsrpa------gLqGalr----setGGLsgkpLrdlStqTIreMyalTq-
d1djqa1  ( 261 )    iae----------wgedaGpsr--------fyqqGhTipwVklVkqvSk-
d1ep3a-  ( 200 )    mgv-rfdlktrqpiLan------itgglsGpaIkpvAlklIhqVaqdV--
d1gtea2  ( 739 )    sglMglka-dgtpwPavgagkrttyggvsGtaIrpiAlrAVttIaralp-
d1juba-  ( 196 )    gnglfidpeaesvvIkpk----dGfGgiggayIkptAlaNVraFytrLk-
d1kbia1  ( 374 )    -------gGrq------------ldf-sr------APIEVLaeTmpiLeq
d1ofda2  (1062 )    -------dggt--g---ASPlsSIkhAGS------PWELGVTeVHrvLme
d1oyaa-  ( 292 )    vt--------------npflte--------gege-yeggsNdfVysiWk-
d1p0ka-  ( 227 )    -------------qisff-n-----swgi------sTAASLAEIrsefp-
d1p4ca-  ( 256 )    -------gGrq------------lDc-ai------SPMevLaqSvakTg-
d1ps9a1  ( 252 )    hEA----------ripti-at---------pVprgafswVTrkLkghVs-
d1q45a-  ( 300 )    e----------------------------------eeaklMksLrmaYn-
d1tb3a1  ( 248 )    -------gGrQ------------lDe-vs------ASIdaLreVvaaVk-
d1tv5a1  ( 461 )    tqI-n------dIk-sFe----nkkGGVsGakLkdiStkFIceMynyTn-
d1vcfa1  ( 215 )    -------GGtS--wArve-ewvelceigi------pTArAIleVreVlp-
d1vhna-  ( 164 )    Vvqsft---------------------------grAewkaLsvL----e-
d1vyra-  ( 275 )    l--------------------a--------ggkp-YseaFrqkvrerFh-
d1z41a1  ( 253 )    Lvha---------din---------------vfpgyQvsfAekIreqAd-
                                                         aaaaaaaaaa   

                             810       820       830       840       850 
d1d3ga-  ( 326 )    ----grvpIIGvggVs-sGqDALeKIr-AGAsLVQLytALtFw-------
d1djqa1  ( 292 )    ------kpVLGvGrYt-dpekMieIvtkgyAdIIGCarPSiadpflPqkV
d1ep3a-  ( 241 )    -----dipIIGMggVa-nAqdVLeMYm-agAsAVAVgtaNfad-------
d1gtea2  ( 787 )    -----gfpILAtggId-saeSGlqFlh-sgAsVLQVcsavqnq-------
d1juba-  ( 241 )    ----peIqIIGtgGIe-tGqdAfeHLl-CGAtMLQIgtaLhke-------
d1kbia1  ( 398 )    rnlkdkLeVFVdgGVr-rGtDVLkALC-LgAkGVGLgrPFlYANSCy---
d1ofda2  (1094 )    nqlRdrVlLRAdGgLK-TGwDVVMAAL-MGAEeYgFgsIAmIAEGciMaR
d1oyaa-  ( 318 )    ------gpVIRagNFalhpevVreeVkdk-rTLIGYgrFFISNPdLVdRl
d1p0ka-  ( 251 )    -----astMIASggLq-dAldVAkAIA-LGAsCTGMaghFlkaltds---
d1p4ca-  ( 279 )    ------kpVLIdSGFr-rGsDIVKALA-lgAeAVLLgrATlYGLAAr---
d1ps9a1  ( 281 )    ------lpLVTtnrIn-dpqvAddILsrgdadMVSMarpFladaelLskA
d1q45a-  ( 315 )    ------gtFMSSggF--nkelGmqaVqqgdAdLVSYgrlFIANPdLvsRF
d1tb3a1  ( 271 )    ----gkieVYMdgGVr-tGtDVLKALA-LgArCIFLgrPILWGLACk---
d1tv5a1  ( 498 )    ----kqIpIIAsgGIF-sGldALeKIe-AGAsVCQLySCLvFn-------
d1vcfa1  ( 256 )    -----hlpLVAsgGVy-tGtdGAkALA-LGAdLLAVarpLlrpAl-e---
d1vhna-  ( 182 )    ----kripTFVsgdIf-tPedAkrAleeSgCdGLLVarGAiGr-------
d1vyra-  ( 295 )    ------gviiGAgaY--taekAedligkglidAvAFgrdYiANPdlvaRl
d1z41a1  ( 279 )    -------aTGAvg-it-dGs-AeeiLqngrAdLIFIgrellrdpfFArtA
                            bbbb      aaaaaaaaa     bbbb aaaaa        

                             860       870       880       890       900 
d1d3ga-  ( 363 )    ----------------------------GppVVgkVKreLe--------a
d1djqa1  ( 335 )    eqGryd                                            
d1ep3a-  ( 277 )    -----------------------------pfvCpkIidkLp--------e
d1gtea2  ( 823 )    ----------------------------dftvIqdYctgLk--------a
d1juba-  ( 278 )    ----------------------------gpaIFdrIikeLe--------e
d1kbia1  ( 443 )    ------------------------grnGVekAIeiLrdeIe--------m
d1ofda2  (1142 )    vchtnncpvGVATQqerlrqrFkGvPgqVvnFFyfIAeeVr--------s
d1oyaa-  ( 361 )    ekglpLNkydrdtfyqms-ahgYidyptyeeAlk-------lgwdkk   
d1p0ka-  ( 291 )    ------------------------geegLleeIqlIleeLk--------l
d1p4ca-  ( 318 )    ------------------------GetGVdeVLtlLkadId--------r
d1ps9a1  ( 324 )    qsgrade                                           
d1q45a-  ( 357 )    kidgelnkynrktFytqdpvvgYTdypflap                   
d1tb3a1  ( 312 )    ------------------------GedGVkeVLdiLtaeLh--------r
d1tv5a1  ( 535 )    ----------------------------gMkSAvqIkreLn--------h
d1vcfa1  ( 295 )    ------------------------gaerVaawIgdYleeLr--------t
d1vhna-  ( 220 )    -----------------------------PWIFkQIkdflrsgkysepsr
d1vyra-  ( 337 )    qkkaelnpqrpesfyggg-aeGYtdYpsl                     
d1z41a1  ( 321 )    AkqLnte----------------------ipApv-------qyergw   
                                                   aaa                

                             910       920       930       940       950 
d1d3ga-  ( 377 )    lLkeqgfggVtdAiGadhrr                              
d1djqa1                                                               
d1ep3a-  ( 290 )    LMdqyrIesLesLiqevkegkk                            
d1gtea2  ( 837 )    llylksie                                          
d1juba-  ( 292 )    iMnqkgyqsiadFhGklksl                              
d1kbia1  ( 461 )    sMrlLGvtsiaeLk--------pdLLdlstlkartvgvpndvlynevyeg
d1ofda2  (1184 )    lLahLGyrsLddII------GRTdLLkvrs-dvqLskTqnLtLdcLlnLp
d1oyaa-                                                               
d1p0ka-  ( 309 )    iMtvLgArtIadLq---------kapLvIkg---------eThhwLterg
d1p4ca-  ( 336 )    tLaqIGCpdItsLs--------pdyLqne                     
d1ps9a1                                                               
d1q45a-                                                               
d1tb3a1  ( 330 )    cMtlSGCqsvaeIs--------pdLIqf                      
d1tv5a1  ( 549 )    lLyqrgYynLkeAiGrkh                                
d1vcfa1  ( 313 )    aLfaIGArnPkeAr---------grVerv                     
d1vhna-  ( 241 )    eeiLrTFerHLeLLiktkgerkAVverkFlagYTkdLkgarrfrekvkie
d1vyra-                                                               
d1z41a1                                                               
                                                                      

                             960    
d1d3ga-                             
d1djqa1                             
d1ep3a-                             
d1gtea2                             
d1juba-                             
d1kbia1  ( 503 )    pt----ltefeda   
d1ofda2  (1227 )    dTkqnrqwLnhep   
d1oyaa-                             
d1p0ka-  ( 341 )    Vn----tssysvr   
d1p4ca-                             
d1ps9a1                             
d1q45a-                             
d1tb3a1                             
d1tv5a1                             
d1vcfa1                             
d1vhna-  ( 293 )    evqiLkeFynfIkeve
d1vyra-                             
d1z41a1                             
                                    

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla ç
positive phi: italic x

Jmol view

Jmol Model View
Jmol Command prompt
Response Logs

Tree based on RMSD between structures

Matrices

1. Percentage Identity Matrix  [View | Download]
2. Distance Matrix  [View | Download]

PCA based on sequence identity

1. PCA  [View]
2. Plot file  [Download]

CUSP Results

CUSP Result   [View | Download]

Alistat - Alignment Statistics

Alignment Statistics  [Download]

SMotif - Conserved Structural Motifs

SMotif Result   [View | Download]

MeanRMS

MeanRMS  [Download]